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Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
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Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments

Pettengill, James B ; Rand, Hugh ; Wang, Shizhen S ; Kautter, Donald ; Pightling, Arthur ; Wang, Yu Spanu, Carlo

PloS one, 2022-09, Vol.17 (9), p.e0268470-e0268470 [Periódico revisado por pares]

San Francisco: Public Library of Science

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2
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
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Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence

Daeschel, Devin ; Pettengill, James B ; Wang, Yu ; Chen, Yi ; Allard, Marc ; Snyder, Abigail B

BMC genomics, 2022-07, Vol.23 (1), p.1-488, Article 488 [Periódico revisado por pares]

London: BioMed Central Ltd

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3
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
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CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data

Davis, Steve ; Pettengill, James B ; Luo, Yan ; Payne, Justin ; Shpuntoff, Al ; Rand, Hugh ; Strain, Errol

PeerJ. Computer science, 2015-08, Vol.1, p.e20 [Periódico revisado por pares]

San Diego: PeerJ. Ltd

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4
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
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Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

Pightling, Arthur W ; Pettengill, James B ; Wang, Yu ; Rand, Hugh ; Strain, Errol

Genome Biology, 2019-12, Vol.20 (1), p.286-286, Article 286 [Periódico revisado por pares]

England: BioMed Central Ltd

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5
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Haendiges, Julie ; Davidson, Gordon R ; Pettengill, James B ; Reed, Elizabeth ; Ramachandran, Padmini ; Blessington, Tyann ; Miller, Jesse D ; Anderson, Nathan ; Myoda, Sam ; Brown, Eric W ; Zheng, Jie ; Tikekar, Rohan ; Hoffmann, Maria Mossong, Joël

PloS one, 2021-11, Vol.16 (11), p.e0259471 [Periódico revisado por pares]

United States: Public Library of Science

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6
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
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The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence

Pettengill, James B Lumbsch, Helge Thorsten

PloS one, 2015-08, Vol.10 (8), p.e0128407-e0128407 [Periódico revisado por pares]

United States: Public Library of Science

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7
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

Commichaux, Seth ; Rand, Hugh ; Javkar, Kiran ; Molloy, Erin K ; Pettengill, James B ; Pightling, Arthur ; Hoffmann, Maria ; Pop, Mihai ; Jayeola, Victor ; Foley, Steven ; Luo, Yan

BMC genomics, 2023-04, Vol.24 (1), p.165-165, Article 165 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Pettengill, James B ; Pightling, Arthur W ; Baugher, Joseph D ; Rand, Hugh ; Strain, Errol Tang, Haixu

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162 [Periódico revisado por pares]

United States: Public Library of Science

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9
Evaluation of Avocados as a Possible Source of Listeria monocytogenes Infections, United States, 2016 to 2019
Evaluation of Avocados as a Possible Source of Listeria monocytogenes Infections, United States, 2016 to 2019
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Evaluation of Avocados as a Possible Source of Listeria monocytogenes Infections, United States, 2016 to 2019

Pomeroy, Mary ; Conrad, Amanda ; Pettengill, James B ; McCLURE, Monica ; Wellman, Allison A ; Marus, Jessie ; Huffman, Jasmine ; Wise, Matthew

Journal of food protection, 2021-07, Vol.84 (7), p.1122-1126 [Periódico revisado por pares]

United States: Elsevier Limited

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10
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
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Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere

Ottesen, Andrea R ; Gonzalez, Antonio ; Bell, Rebecca ; Arce, Caroline ; Rideout, Steven ; Allard, Marc ; Evans, Peter ; Strain, Errol ; Musser, Steven ; Knight, Rob ; Brown, Eric ; Pettengill, James B Chang, Yung-Fu

PloS one, 2013-09, Vol.8 (9), p.e73079 [Periódico revisado por pares]

United States: Public Library of Science

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