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CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
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CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data

Davis, Steve ; Pettengill, James B ; Luo, Yan ; Payne, Justin ; Shpuntoff, Al ; Rand, Hugh ; Strain, Errol

PeerJ. Computer science, 2015-08, Vol.1, p.e20 [Periódico revisado por pares]

San Diego: PeerJ. Ltd

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2
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Haendiges, Julie ; Davidson, Gordon R ; Pettengill, James B ; Reed, Elizabeth ; Ramachandran, Padmini ; Blessington, Tyann ; Miller, Jesse D ; Anderson, Nathan ; Myoda, Sam ; Brown, Eric W ; Zheng, Jie ; Tikekar, Rohan ; Hoffmann, Maria Mossong, Joël

PloS one, 2021-11, Vol.16 (11), p.e0259471 [Periódico revisado por pares]

United States: Public Library of Science

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3
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
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The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence

Pettengill, James B Lumbsch, Helge Thorsten

PloS one, 2015-08, Vol.10 (8), p.e0128407-e0128407 [Periódico revisado por pares]

United States: Public Library of Science

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4
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Pettengill, James B ; Pightling, Arthur W ; Baugher, Joseph D ; Rand, Hugh ; Strain, Errol Tang, Haixu

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162 [Periódico revisado por pares]

United States: Public Library of Science

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5
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
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Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere

Ottesen, Andrea R ; Gonzalez, Antonio ; Bell, Rebecca ; Arce, Caroline ; Rideout, Steven ; Allard, Marc ; Evans, Peter ; Strain, Errol ; Musser, Steven ; Knight, Rob ; Brown, Eric ; Pettengill, James B Chang, Yung-Fu

PloS one, 2013-09, Vol.8 (9), p.e73079 [Periódico revisado por pares]

United States: Public Library of Science

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6
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
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Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

Kayikcioglu, Tunc ; Amirzadegan, Jasmine ; Rand, Hugh ; Tesfaldet, Bereket ; Timme, Ruth E ; Pettengill, James B

PeerJ (San Francisco, CA), 2023-01, Vol.11, p.e14596-e14596, Article e14596 [Periódico revisado por pares]

United States: PeerJ. Ltd

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7
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
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An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella

Pettengill, James B ; Luo, Yan ; Davis, Steven ; Chen, Yi ; Gonzalez-Escalona, Narjol ; Ottesen, Andrea ; Rand, Hugh ; Allard, Marc W ; Strain, Errol

PeerJ (San Francisco, CA), 2014-10, Vol.2, p.e620-e620 [Periódico revisado por pares]

United States: PeerJ. Ltd

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8
Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities
Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities
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Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities

Wang, Y U ; Pettengill, James B ; Pightling, Arthur ; Timme, Ruth ; Allard, Marc ; Strain, Errol ; Rand, Hugh

Journal of food protection, 2018-12, Vol.81 (12), p.2082-2089 [Periódico revisado por pares]

United States: Allen Press Inc

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9
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica
The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica
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The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

Pettengill, James B ; Timme, Ruth E ; Barrangou, Rodolphe ; Toro, Magaly ; Allard, Marc W ; Strain, Errol ; Musser, Steven M ; Brown, Eric W

PeerJ (San Francisco, CA), 2014-04, Vol.2, p.e340-e340 [Periódico revisado por pares]

United States: PeerJ. Ltd

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