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Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities
Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities
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Application of quasimetagenomics methods to define microbial diversity and subtype Listeria monocytogenes in dairy and seafood production facilities

Kocurek, Brandon ; Ramachandran, Padmini ; Grim, Christopher J ; Morin, Paul ; Howard, Laura ; Ottesen, Andrea ; Timme, Ruth ; Leonard, Susan R ; Rand, Hugh ; Strain, Errol ; Tadesse, Daniel ; Pettengill, James B ; Lacher, David W ; Mammel, Mark ; Jarvis, Karen G Wang, Luxin

Microbiology spectrum, 2023-12, Vol.11 (6), p.e0148223-e0148223 [Periódico revisado por pares]

United States: American Society for Microbiology

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2
Multinational Outbreak of Listeria monocytogenes Infections Linked to Enoki Mushrooms Imported from the Republic of Korea 2016–2020
Multinational Outbreak of Listeria monocytogenes Infections Linked to Enoki Mushrooms Imported from the Republic of Korea 2016–2020
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Multinational Outbreak of Listeria monocytogenes Infections Linked to Enoki Mushrooms Imported from the Republic of Korea 2016–2020

Pereira, Evelyn ; Conrad, Amanda ; Tesfai, Adiam ; Palacios, Alexandra ; Kandar, Rima ; Kearney, Ashley ; Locas, Annie ; Jamieson, Fred ; Elliot, Elisa ; Otto, Mark ; Kurdilla, Kerry ; Tijerina, Mary ; Son, Insook ; Pettengill, James B. ; Chen, Yi ; Fox, Teresa ; Lane, Chris ; Aguillon, Ryan ; Huffman, Jasmine ; Sheau Fong Low, Mabel ; Wise, Matthew ; Edwards, Lauren ; Bidol, Sally ; Blankenship, Heather M. ; Rosen, Hilary E. ; Leclercq, Alexandre ; Lecuit, Marc ; Tourdjman, Mathieu ; Herber, Hubert ; Singleton, Lauren S. ; Viazis, Stelios ; Bazaco, Michael C.

Journal of food protection, 2023-07, Vol.86 (7), p.100101-100101, Article 100101 [Periódico revisado por pares]

United States: Elsevier Inc

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3
A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling
A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling
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A longitudinal study to examine the influence of farming practices and environmental factors on pathogen prevalence using structural equation modeling

Ferguson, Martine ; Hsu, Chiun-Kang ; Grim, Christopher ; Kauffman, Michael ; Jarvis, Karen ; Pettengill, James B ; Babu, Uma S ; Harrison, Lisa M ; Li, Baoguang ; Hayford, Alice ; Balan, Kannan V ; Freeman, Josefina P ; Rajashekara, Gireesh ; Lipp, Erin K ; Rozier, Ralph Scott ; Zimeri, Anne Marie ; Burall, Laurel S

Frontiers in microbiology, 2023-04, Vol.14, p.1141043-1141043 [Periódico revisado por pares]

Switzerland: Frontiers Media S.A

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4
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

Commichaux, Seth ; Rand, Hugh ; Javkar, Kiran ; Molloy, Erin K ; Pettengill, James B ; Pightling, Arthur ; Hoffmann, Maria ; Pop, Mihai ; Jayeola, Victor ; Foley, Steven ; Luo, Yan

BMC genomics, 2023-04, Vol.24 (1), p.165-165, Article 165 [Periódico revisado por pares]

England: BioMed Central Ltd

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5
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples
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Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

Kayikcioglu, Tunc ; Amirzadegan, Jasmine ; Rand, Hugh ; Tesfaldet, Bereket ; Timme, Ruth E ; Pettengill, James B

PeerJ (San Francisco, CA), 2023-01, Vol.11, p.e14596-e14596, Article e14596 [Periódico revisado por pares]

United States: PeerJ. Ltd

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6
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
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Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments

Pettengill, James B ; Rand, Hugh ; Wang, Shizhen S ; Kautter, Donald ; Pightling, Arthur ; Wang, Yu Spanu, Carlo

PloS one, 2022-09, Vol.17 (9), p.e0268470-e0268470 [Periódico revisado por pares]

San Francisco: Public Library of Science

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7
Additional file 1 of Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
Additional file 1 of Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
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Additional file 1 of Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence

Daeschel, Devin ; Pettengill, James B. ; Wang, Yu ; Chen, Yi ; Allard, Marc ; Snyder, Abigail B.

figshare 2022

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8
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
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Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence

Daeschel, Devin ; Pettengill, James B ; Wang, Yu ; Chen, Yi ; Allard, Marc ; Snyder, Abigail B

BMC genomics, 2022-07, Vol.23 (1), p.1-488, Article 488 [Periódico revisado por pares]

London: BioMed Central Ltd

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9
Microbiome Population Dynamics of Cold-Smoked Sockeye Salmon during Refrigerated Storage and after Culture Enrichment
Microbiome Population Dynamics of Cold-Smoked Sockeye Salmon during Refrigerated Storage and after Culture Enrichment
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Microbiome Population Dynamics of Cold-Smoked Sockeye Salmon during Refrigerated Storage and after Culture Enrichment

Jarvis, Karen G ; Hsu, Chiun-Kang ; Pettengill, James B ; Ihrie, John ; Karathia, Hiren ; Hasan, Nur A ; Grim, Christopher J

Journal of food protection, 2022-02, Vol.85 (2), p.238-253 [Periódico revisado por pares]

United States: Elsevier Limited

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10
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Haendiges, Julie ; Davidson, Gordon R ; Pettengill, James B ; Reed, Elizabeth ; Ramachandran, Padmini ; Blessington, Tyann ; Miller, Jesse D ; Anderson, Nathan ; Myoda, Sam ; Brown, Eric W ; Zheng, Jie ; Tikekar, Rohan ; Hoffmann, Maria Mossong, Joël

PloS one, 2021-11, Vol.16 (11), p.e0259471 [Periódico revisado por pares]

United States: Public Library of Science

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