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ZEPPI: Proteome-scale sequence-based evaluation of protein-protein interaction models
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ZEPPI: Proteome-scale sequence-based evaluation of protein-protein interaction models

Zhao, Haiqing ; Petrey, Donald ; Murray, Diana ; Honig, Barry

Proceedings of the National Academy of Sciences - PNAS, 2024-05, Vol.121 (21), p.e2400260121-e2400260121 [Periódico revisado por pares]

United States: National Academy of Sciences

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Parallel molecular computation on digital data stored in DNA
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Parallel molecular computation on digital data stored in DNA

Wang, Boya ; Wang, Siyuan Stella ; Chalk, Cameron ; Ellington, Andrew D. ; Soloveichik, David

Proceedings of the National Academy of Sciences - PNAS, 2023-09, Vol.120 (37), p.e2217330120-e2217330120 [Periódico revisado por pares]

Washington: National Academy of Sciences

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3
Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins
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Data-driven large-scale genomic analysis reveals an intricate phylogenetic and functional landscape in J-domain proteins

Malinverni, Duccio ; Zamuner, Stefano ; Rebeaud, Mathieu E ; Barducci, Alessandro ; Nillegoda, Nadinath B ; De Los Rios, Paolo

Proceedings of the National Academy of Sciences - PNAS, 2023-08, Vol.120 (32), p.e2218217120-e2218217120 [Periódico revisado por pares]

United States: National Academy of Sciences

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4
Darwinian genomics and diversity in the tree of life
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Darwinian genomics and diversity in the tree of life

Stephan, Taylorlyn ; Burgess, Shawn M ; Cheng, Hans ; Danko, Charles G ; Gill, Clare A ; Jarvis, Erich D ; Koepfli, Klaus-Peter ; Koltes, James E ; Lyons, Eric ; Ronald, Pamela ; Ryder, Oliver A ; Schriml, Lynn M ; Soltis, Pamela ; VandeWoude, Sue ; Zhou, Huaijun ; Ostrander, Elaine A ; Karlsson, Elinor K

Proceedings of the National Academy of Sciences - PNAS, 2022-01, Vol.119 (4), p.1 [Periódico revisado por pares]

United States: National Academy of Sciences

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5
Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins
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Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins

Kandathil, Shaun M ; Greener, Joe G ; Lau, Andy M ; Jones, David T

Proceedings of the National Academy of Sciences - PNAS, 2022-01, Vol.119 (4), p.1 [Periódico revisado por pares]

United States: National Academy of Sciences

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6
Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction
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Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

Yang, Pengshuo ; Zheng, Wei ; Ning, Kang ; Zhang, Yang

Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (49) [Periódico revisado por pares]

United States: National Academy of Sciences

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7
Ancestral regulatory mechanisms specify conserved midbrain circuitry in arthropods and vertebrates
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Ancestral regulatory mechanisms specify conserved midbrain circuitry in arthropods and vertebrates

Bridi, Jessika C. ; Ludlow, Zoe N. ; Kottler, Benjamin ; Hartmann, Beate ; Vanden Broeck, Lies ; Dearlove, Jonah ; Göker, Markus ; Strausfeld, Nicholas J. ; Callaerts, Patrick ; Hirth, Frank

Proceedings of the National Academy of Sciences - PNAS, 2020-08, Vol.117 (32), p.19544-19555 [Periódico revisado por pares]

United States: National Academy of Sciences

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8
Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation
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Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation

Yesselman, Joseph D. ; Denny, Sarah K. ; Bisaria, Namita ; Herschlag, Daniel ; Greenleaf, William J. ; Das, Rhiju

Proceedings of the National Academy of Sciences - PNAS, 2019-08, Vol.116 (34), p.16847-16855 [Periódico revisado por pares]

United States: National Academy of Sciences

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9
Distance-based protein folding powered by deep learning
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Distance-based protein folding powered by deep learning

Xu, Jinbo

Proceedings of the National Academy of Sciences - PNAS, 2019-08, Vol.116 (34), p.16856-16865 [Periódico revisado por pares]

United States: National Academy of Sciences

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10
Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp–His–Trp triad revealed by DNP-enhanced MAS-NMR
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Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp–His–Trp triad revealed by DNP-enhanced MAS-NMR

Maciejko, Jakob ; Kaur, Jagdeep ; Becker-Baldus, Johanna ; Glaubitz, Clemens

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (17), p.8342-8349 [Periódico revisado por pares]

United States: National Academy of Sciences

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