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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis
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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

Wieder, Cecilia ; Frainay, Clément ; Poupin, Nathalie ; Rodríguez-Mier, Pablo ; Vinson, Florence ; Cooke, Juliette ; Lai, Rachel Pj ; Bundy, Jacob G ; Jourdan, Fabien ; Ebbels, Timothy Patil, Kiran Raosaheb

PLoS computational biology, 2021-09, Vol.17 (9), p.e1009105 [Periódico revisado por pares]

United States: Public Library of Science

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2
Constrained Allocation Flux Balance Analysis
Constrained Allocation Flux Balance Analysis
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Constrained Allocation Flux Balance Analysis

Mori, Matteo ; Hwa, Terence ; Martin, Olivier C ; De Martino, Andrea ; Marinari, Enzo Patil, Kiran Raosaheb

PLoS computational biology, 2016-06, Vol.12 (6), p.e1004913-e1004913 [Periódico revisado por pares]

United States: Public Library of Science

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3
Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models
Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models
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Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models

Pandey, Vikash ; Hadadi, Noushin ; Hatzimanikatis, Vassily Patil, Kiran Raosaheb

PLoS computational biology, 2019-05, Vol.15 (5), p.e1007036-e1007036 [Periódico revisado por pares]

United States: Public Library of Science

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4
The impact of interactions on invasion and colonization resistance in microbial communities
The impact of interactions on invasion and colonization resistance in microbial communities
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The impact of interactions on invasion and colonization resistance in microbial communities

Kurkjian, Helen M ; Akbari, M Javad ; Momeni, Babak Patil, Kiran Raosaheb

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008643-e1008643 [Periódico revisado por pares]

United States: Public Library of Science

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5
Independent component analysis recovers consistent regulatory signals from disparate datasets
Independent component analysis recovers consistent regulatory signals from disparate datasets
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Independent component analysis recovers consistent regulatory signals from disparate datasets

Sastry, Anand V ; Hu, Alyssa ; Heckmann, David ; Poudel, Saugat ; Kavvas, Erol ; Palsson, Bernhard O Patil, Kiran Raosaheb

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008647-e1008647 [Periódico revisado por pares]

United States: Public Library of Science

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6
Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
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Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

De Meyer, Sam ; Cruz, Daniel Felipe ; De Swaef, Tom ; Lootens, Peter ; De Block, Jolien ; Bird, Kevin ; Sprenger, Heike ; Van de Voorde, Michael ; Hawinkel, Stijn ; Van Hautegem, Tom ; Inzé, Dirk ; Nelissen, Hilde ; Roldán-Ruiz, Isabel ; Maere, Steven Patil, Kiran Raosaheb

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011161-e1011161 [Periódico revisado por pares]

United States: Public Library of Science

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7
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets
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An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets

Schneider, Philipp ; von Kamp, Axel ; Klamt, Steffen Patil, Kiran Raosaheb

PLoS computational biology, 2020-07, Vol.16 (7), p.e1008110 [Periódico revisado por pares]

United States: Public Library of Science

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8
Unified tumor growth mechanisms from multimodel inference and dataset integration
Unified tumor growth mechanisms from multimodel inference and dataset integration
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Unified tumor growth mechanisms from multimodel inference and dataset integration

Beik, Samantha P ; Harris, Leonard A ; Kochen, Michael A ; Sage, Julien ; Quaranta, Vito ; Lopez, Carlos F Patil, Kiran Raosaheb

PLoS computational biology, 2023-07, Vol.19 (7), p.e1011215-e1011215 [Periódico revisado por pares]

United States: Public Library of Science

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9
Species abundance correlations carry limited information about microbial network interactions
Species abundance correlations carry limited information about microbial network interactions
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Species abundance correlations carry limited information about microbial network interactions

Pinto, Susanne ; Benincà, Elisa ; van Nes, Egbert H ; Scheffer, Marten ; Bogaards, Johannes A Patil, Kiran Raosaheb

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010491-e1010491 [Periódico revisado por pares]

San Francisco: Public Library of Science

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10
Individualized network analysis reveals link between the gut microbiome, diet intervention and Gestational Diabetes Mellitus
Individualized network analysis reveals link between the gut microbiome, diet intervention and Gestational Diabetes Mellitus
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Individualized network analysis reveals link between the gut microbiome, diet intervention and Gestational Diabetes Mellitus

Liu, Yimeng ; Amit, Guy ; Zhao, Xiaolei ; Wu, Na ; Li, Daqing ; Bashan, Amir Patil, Kiran Raosaheb

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011193-e1011193 [Periódico revisado por pares]

United States: Public Library of Science

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