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Xenbase: a genomic, epigenomic and transcriptomic model organism database

Karimi, Kamran ; Fortriede, Joshua D ; Lotay, Vaneet S ; Burns, Kevin A ; Wang, Dong Zhou ; Fisher, Malcom E ; Pells, Troy J ; James-Zorn, Christina ; Wang, Ying ; Ponferrada, V G ; Chu, Stanley ; Chaturvedi, Praneet ; Zorn, Aaron M ; Vize, Peter D

Nucleic acids research, 2018-01, Vol.46 (D1), p.D861-D868 [Periódico revisado por pares]

England: Oxford University Press

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Título:
Xenbase: a genomic, epigenomic and transcriptomic model organism database
Autor: Karimi, Kamran ; Fortriede, Joshua D ; Lotay, Vaneet S ; Burns, Kevin A ; Wang, Dong Zhou ; Fisher, Malcom E ; Pells, Troy J ; James-Zorn, Christina ; Wang, Ying ; Ponferrada, V G ; Chu, Stanley ; Chaturvedi, Praneet ; Zorn, Aaron M ; Vize, Peter D
Assuntos: Animals ; Base Sequence ; Chromatin Immunoprecipitation ; Computational Biology - organization & administration ; CRISPR-Cas Systems ; Database Issue ; Databases, Genetic ; Databases, Nucleic Acid ; Epigenomics ; Gene Ontology ; Genome ; Genomics ; MicroRNAs - genetics ; Molecular Sequence Annotation ; Open Reading Frames - genetics ; RNA - genetics ; Software ; Transcriptome ; User-Computer Interface ; Web Browser ; Xenopus - genetics ; Xenopus laevis - genetics
É parte de: Nucleic acids research, 2018-01, Vol.46 (D1), p.D861-D868
Notas: ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
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Descrição: Abstract Xenbase (www.xenbase.org) is an online resource for researchers utilizing Xenopus laevis and Xenopus tropicalis, and for biomedical scientists seeking access to data generated with these model systems. Content is aggregated from a variety of external resources and also generated by in-house curation of scientific literature and bioinformatic analyses. Over the past two years many new types of content have been added along with new tools and functionalities to reflect the impact of high-throughput sequencing. These include new genomes for both supported species (each with chromosome scale assemblies), new genome annotations, genome segmentation, dynamic and interactive visualization for RNA-Seq data, updated ChIP-Seq mapping, GO terms, protein interaction data, ORFeome support, and improved connectivity to other biomedical and bioinformatic resources.
Editor: England: Oxford University Press
Idioma: Inglês

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Xenbase: a genomic, epigenomic and transcriptomic model organism database

Karimi, Kamran ; Fortriede, Joshua D ; Lotay, Vaneet S ; Burns, Kevin A ; Wang, Dong Zhou ; Fisher, Malcom E ; Pells, Troy J ; James-Zorn, Christina ; Wang, Ying ; Ponferrada, V G ; Chu, Stanley ; Chaturvedi, Praneet ; Zorn, Aaron M ; Vize, Peter D

England: Oxford University Press

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