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The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

Elsik, Christine G.; Tellam, Ross L.; Worley, Kim C.; Gibbs, Richard A.; Abatepaulo, Antonio R. R.; Abbey, Colette A.; Adelson, David L.; Aerts, Jan; Ahola, Virpi; Alexander, Lee; Alioto, Tyler; Almeida, Iassudara G.; Amadio, Ariel F.; Anatriello, Elen; Antonarakis, Stylianos E.; Anzola, Juan M.; Astashyn, Alex; Bahadue, Suria M.; Baldwin, Cynthia L.; Barris, Wes; Baxter, Rebecca; Bell, Stephanie Nicole; Bennett, Anna K.; Bennett, Gary L.; Biase, Fernando H.; Boldt, Clayton R.; Bradley, Daniel G.; Brinkman, Fiona S. L.; Brinkmeyer-Langford, Candice L.; Brown, Wendy C.; Brownstein, Michael J.; Buhay, Christian; Caetano, Alexandre R.; Camara, Francisco; Carroll, Jeffrey A.; Carvalho, Wanessa A.; Casey, Theresa; Cervelatti, Elaine P.; Chack, Joseph; Chacko, Elsa; Chandrabose, Mimi M.; Chapin, Jennifer E.; Chapple, Charles E.; Chen, Hsiu-Chuan; Chen, Lin; Cheng, Ye; Cheng, Ze; Childers, Christopher P.; Chitko-Mckown, Carol G.; Chiu, Readman; Choi, Jungwoo; Chrast, Jacqueline; Colley, Adam J.; Connelley, Tomothy; Cree, Andy; Curry, Stacey; Dalrymple, Brian; Dao, Marvin Diep; Davis, Clay; Oliveira, Carlo J. F. De; Santos, Isabel K. F. De Miranda; Campos, Tatiana A. De; Deobald, Heather; Devinoy, Eve; Dickins, C. Michael; Yan, Ding; Dinh, Huyen H.; Donato, Marcos De; Donohue, Kaitlin E.; Donthu, Ravikiran; Dovc, Peter; Dugan-Rocha, Shannon; Durbin, K. James; Eberlein, Annett; Edgar, Robert C.; Egan, Amy; Eggen, Andre; Eichler, Evan E.; Elhaik, Eran; Ellis, Shirley A.; Elnitski, Laura; Ermolaeva, Olga; Eyras, Eduardo; Fitzsimmons, Carolyn J.; Fowler, Gerald R.; Franzin, Alessandra M.; Fritz, Krista; Gabisi, Ramatu Ayiesha; Garcia, Gustavo R.; Garcia, Jose Fernando; Genini, Sem; Gerlach, Daniel; German, J. Bruce; Gilbert, James G. R.; Gill, Clare A.; Gladney, Cody J.; Glass, Elizabeth J.; Goodell, Jason; Grant, Jason R.; Graur, Dan; Greaser, Marion L.; Green, Jonathan A.; Green, Ronnie D.; Guan, Leluo; Guigo, Roderic; Hadsell, Darryl L.; Hagen, Darren E.; Hakimov, Hatam A.; Halgren, Rob; Hamernik, Debora L.; Hamilton, Cerissa; Harhay, Gregory P.; Harrow, Jennifer L.; Hart, Elizabeth A.; Hastings, Nicola; Havlak, Paul; Henrichsen, Charlotte N.; Hernandez, Judith; Hernandez, Marta; Herzig, Carolyn T. A.; Hiendleder, Stefan G.; Hines, Sandra; Hitchens, Matthew Edward; Hlavina, Wratko; Hobbs, Matthew; Holder, Michael; Holt, Robert A.; Hu, Zhi-Liang; Hume, Jennifer; Iivanainen, Antti; Ingham, Aaron; Iso-Touru, Terhi; Jamis, Catherine; Jann, Oliver; Jensen, Kirsty; Jhangiani, Shalini N.; Jiang, Huaiyang; Johnson, Angela Jolivet; Jones, Steven J. M.; Joshi, Vandita; Junier, Thomas; Kapetis, Dimos; Kappes, Steve M.; Kapustin, Yuri; Keele, John W.; Kent, Matthew P.; Kerr, Tovah; Khalil, Sari S.; Khatib, Hasan; Kiryutin, Boris; Kitts, Paul; Kokocinski, Felix; Kolbehdari, Davood; Kovar, Christie L.; Kriventseva, Evgenia V.; Kumar, Charu G.; Kumar, Dinesh; Lahmers, Kevin K.; Landrum, Melissa; Larkin, Denis M.; Lau, Lilian P. L.; Leach, Richard; Lee, Justin C. M.; Lee, Sandra; Lemay, Danielle G.; Lewin, Harris A.; Lewis, Lora R.; Li, Changxi; Lien, Sigbjorn; Liu, George E.; Liu, Yih-Shin; Liu, Yue; Logan, Krystin M.; Lopez, John; Lozado, Ryan J.; Lutzow, Ylva Strandberg; Lynn, David J.; Macneil, Michael D.; Maglott, Donna; Malinverni, Roberto; Maqbool, Nauman J.; Marques, Elisa; Marra, Marco A.; Martin, William F.; Martins, Natalia F.; Maruyama, Sandra R.; Matukumalli, Lakshmi K.; Mazza, Raffaele; Mcewan, John C.; Mckay, Stephanie D.; Mclean, Kim L.; Mcwilliam, Sean; Medrano, Juan F.; Memili, Erdogan; Moen, Charles; Molenaar, Adrian J.; Moore, Stephen S.; Moore, Richard; More, Daniela D.; Moreno, Barbara T.; Morgan, Margaret B.; Muntean, Carl T.; Muzny, Donna M.; Nandakumar, Hari P.; Nazareth, Lynne V.; Nguyen, Ngoc Bich; Nicholas, Frank W.; Nogueira, Marcelo F. G.; Okwuonu, Geoffrey O.; Olsaker, Ingrid; Pant, Sameer D.; Panzitta, Francesca; Pastor, Rosemeire C. P.; Patel, Bella Mayurkumar; Payne, Gemma M.; Plass, Mireya; Poli, Mario A.; Poslusny, Nathan; Pruitt, Kim; Pu, Ling-Ling; Qin, Xiang; Rachagani, Satyanarayana; Raison, Joy M.; Ranganathan, Shoba; Ratnakumar, Abhirami; Razpet, Andrej; Reecy, James; Reese, Justin T.; Ren, Yanru; Reymond, Alexandre; Riggs, Penny K.; Rijnkels, Monique; Rincon, Gonzalo; Roberts, Andy; Rodriguez-Osorio, Nelida; Rodriguez-Zas, Sandra L.; Romero, Natasha E.; Rosenwald, Anne; Ruiz, San Juana; Sabo, Aniko; Salih, Hanni; Sando, Lillian; Santibanez, Jireh; Sapojnikov, Victor; Schein, Jacqueline E.; Schmutz, Sheila M.; Schnabel, Robert D.; Schook, Lawrence; Searle, Stephen M.; Seo, Seongwon; Shen, Yufeng; Shen, Libing; Sherman, Laura; Skow, Loren C.; Smith, Timothy; Snelling, Warren M.; Sodergren, Erica; Solovyev, Victor; Song, Henry; Song, Jiuzhou; Sonstegard, Tad S.; Southey, Bruce R.; Souvorov, Alexandre; Spurlock, Diane; Steffen, David; Stone, Roger T.; Stothard, Paul; Sugimoto, Yoshikazu; Sweedler, Jonathan V.; Takasuga, Akiko; Tammen, Imke; Taniguchi, Masaaki; Taylor, Jeremy F.; Telugu, Bhanu Prakash V. L.; Ucla, Catherine; Urbanski, Jennifer M.; Utsunomiya, Yuri T.; Van, Curtis P.; Vattathil, Selina; Verschoor, Chris P.; Waardenberg, Ashley J.; Walker, Angela; Wang, Zhiquan; Ward, Robert; Warren, James T.; Waterman, Richard C.; Weikard, Rosemarie; Weinstock, George M.; Welsh Jr., Thomas H.; Wheeler, David A.; Wheeler, Thomas T.; White, Stephen N.; Whiteside, Matthew D.; Wilczek-Boney, Katarzyna; Williams, John L.; Williams Jr., Rex Lee; Wilming, Laurens G.; Womack, James; Wright, Rita A.; Wunderlich, Kris R.; Wyss, Carine; Yang, Mary Q.; Yang, Jianqi; Zdobnov, Evgeny M.; Zhang, Jingkun; Zhao, Feng-Qi; Zhu, Bin; Bovine Genome Sequencing And Analysis Consortium Universidade De São Paulo

SCIENCE, v.324, n.5926, p.522-528, 2009

AMER ASSOC ADVANCEMENT SCIENCE 2009

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Molecular findings among patients referred for clinical whole-exome sequencing

Yang, Yaping ; Muzny, Donna M ; Xia, Fan ; Niu, Zhiyv ; Person, Richard ; Ding, Yan ; Ward, Patricia ; Braxton, Alicia ; Wang, Min ; Buhay, Christian ; Veeraraghavan, Narayanan ; Hawes, Alicia ; Chiang, Theodore ; Leduc, Magalie ; Beuten, Joke ; Zhang, Jing ; He, Weimin ; Scull, Jennifer ; Willis, Alecia ; Landsverk

JAMA, 12 November 2014, Vol.312(18), pp.1870-9 [Periódico revisado por pares]

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Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

Daniel W. Bellott ; Jennifer F. Hughes ; Helen Skaletsky ; Laura G. Brown ; Tatyana Pyntikova ; Ting-Jan Cho ; Natalia Koutseva ; Sara Zaghlul ; Tina Graves ; Susie Rock ; Colin Kremitzki ; Robert S. Fulton ; Shannon Dugan ; Yan Ding ; Donna Morton ; Ziad Khan ; Lora Lewis ; Christian Buhay ; Qiaoyan Wang ; Jennifer Watt ; Michael Holder ; Sandy Lee ; Lynne Nazareth ; Steve Rozen ; Donna M. Muzny ; Wesley C. Warren ; Richard A. Gibbs ; Richard K. Wilson ; David C. Page

Nature, 2014, Vol.508(7497), p.494 [Periódico revisado por pares]

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Corrigendum: Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

Daniel W. Bellott ; Jennifer F. Hughes ; Helen Skaletsky ; Laura G. Brown ; Tatyana Pyntikova ; Ting-Jan Cho ; Natalia Koutseva ; Sara Zaghlul ; Tina Graves ; Susie Rock ; Colin Kremitzki ; Robert S. Fulton ; Shannon Dugan ; Yan Ding ; Donna Morton ; Ziad Khan ; Lora Lewis ; Christian Buhay ; Qiaoyan Wang ; Jennifer Watt ; Michael Holder ; Sandy Lee ; Lynne Nazareth ; Jessica Alföldi ; Steve Rozen ; Donna M. Muzny ; Wesley C. Warren ; Richard A. Gibbs ; Richard K. Wilson ; David C. Page

Nature, 2014, Vol.514(7520), p.126 [Periódico revisado por pares]

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Complete Genome Sequence of Treponema paraluiscuniculi , Strain Cuniculi A: The Loss of Infectivity to Humans Is Associated with Genome Decay (Genome Sequence of T. paraluiscuniculi Cuniculi A)

Šmajs, David ; Zobaníková, Marie ; Strouhal, Michal ; Čejková, Darina ; Dugan-Rocha, Shannon ; Pospíšilová, Petra ; Norris, Steven J ; Albert, Tom ; Qin, Xiang ; Hallsworth-Pepin, Kym ; Buhay, Christian ; Muzny, Donna M ; Chen, Lei ; Gibbs, Richard A ; Weinstock, George M Gibas, Cynthia (Editor)

PLoS ONE, 2011, Vol.6(5), p.e20415 [Periódico revisado por pares]

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Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

Jennifer F. Hughes ; Helen Skaletsky ; Laura G. Brown ; Tatyana Pyntikova ; Tina Graves ; Robert S. Fulton ; Shannon Dugan ; Yan Ding ; Christian J. Buhay ; Colin Kremitzki ; Qiaoyan Wang ; Hua Shen ; Michael Holder ; Donna Villasana ; Lynne V. Nazareth ; Andrew Cree ; Laura Courtney ; Joelle Veizer ; Holland Kotkiewicz ; Ting-Jan Cho ; Natalia Koutseva ; Steve Rozen ; Donna M. Muzny ; Wesley C. Warren ; Richard A. Gibbs ; Richard K. Wilson ; David C. Page

Nature, 2012, Vol.483(7387), p.82 [Periódico revisado por pares]

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Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential (The Genomics of G. vaginalis)

Yeoman, Carl J ; Yildirim, Suleyman ; Thomas, Susan M ; Durkin, A. Scott ; Torralba, Manolito ; Sutton, Granger ; Buhay, Christian J ; Ding, Yan ; Dugan-Rocha, Shannon P ; Muzny, Donna M ; Qin, Xiang ; Gibbs, Richard A ; Leigh, Steven R ; Stumpf, Rebecca ; White, Bryan A ; Highlander, Sarah K ; Nelson, Karen E ; Wilson, Brenda A Li, Wenjun (Editor)

PLoS ONE, 2010, Vol.5(8), p.e12411 [Periódico revisado por pares]

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PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations

Wang, Min ; Beck, Christine R ; English, Adam C ; Meng, Qingchang ; Buhay, Christian ; Han, Yi ; Doddapaneni, Harsha V ; Yu, Fuli ; Boerwinkle, Eric ; Lupski, James R ; Muzny, Donna M ; Gibbs, Richard A

BMC genomics, 19 March 2015, Vol.16, pp.214 [Periódico revisado por pares]

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Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

Reid, Jeffrey G ; Carroll, Andrew ; Veeraraghavan, Narayanan ; Dahdouli, Mahmoud ; Sundquist, Andreas ; English, Adam ; Bainbridge, Matthew ; White, Simon ; Salerno, William ; Buhay, Christian ; Yu, Fuli ; Muzny, Donna ; Daly, Richard ; Duyk, Geoff ; Gibbs, Richard A ; Boerwinkle, Eric

BMC bioinformatics, 29 January 2014, Vol.15, pp.30 [Periódico revisado por pares]

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Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy

Lupski, James R ; Gonzaga-Jauregui, Claudia ; Yang, Yaping ; Bainbridge, Matthew N ; Jhangiani, Shalini ; Buhay, Christian J ; Kovar, Christie L ; Wang, Min ; Hawes, Alicia C ; Reid, Jeffrey G ; Eng, Christine ; Muzny, Donna M ; Gibbs, Richard A

Genome Medicine, June 27, 2013, Vol.5(6) [Periódico revisado por pares]

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  1. Buhay, Christian
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  3. Gibbs, Richard A.
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  5. Ding, Yan

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