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Material Type: Artigo
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Data Science and PDBj Activities
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Material Type: Artigo
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NEEMP: software for validation, accurate calculation and fast parameterization of EEM chargesRaček, Tomáš ; Pazúriková, Jana ; Svobodová Vařeková, Radka ; Geidl, Stanislav ; Křenek, Aleš ; Falginella, Francesco Luca ; Horský, Vladimír ; Hejret, Václav ; Koča, JaroslavJournal of cheminformatics, 2016, Vol.8, pp.57 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Protein Structure DatabasesLaskowski, RomanMolecular Biotechnology, 2011, Vol.48(2), pp.183-198 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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SCCJ Cafe –Season 4– 分子のかたち (4)「PDBのデータ書式」工藤, 高裕 ; Kudou, TakahiroJournal of Computer Chemistry, Japan, 2015, Vol.14(2), pp.A13-A16Texto completo disponível |
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Material Type: Artigo
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Straightforward and complete deposition of NMR data to the PDBePenkett, Christopher ; Ginkel, Glen ; Velankar, Sameer ; Swaminathan, Jawahar ; Ulrich, Eldon ; Mading, Steve ; Stevens, Tim ; Fogh, Rasmus ; Gutmanas, Aleksandras ; Kleywegt, Gerard ; Henrick, Kim ; Vranken, WimJournal of Biomolecular NMR, 2010, Vol.48(2), pp.85-92 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB ArchiveYoung, Jasmine Y ; Westbrook, John D ; Feng, Zukang ; Sala, Raul ; Peisach, Ezra ; Oldfield, Thomas J ; Sen, Sanchayita ; Gutmanas, Aleksandras ; Armstrong, David R ; Berrisford, John M ; Chen, Li ; Chen, Minyu ; Di Costanzo, Luigi ; Dimitropoulos, Dimitris ; Gao, Guanghua ; Ghosh, Sutapa ; Gore, Swanand ; Guranovic, Vladimir ; Hendrickx, Pieter M.S ; Hudson, Brian P ; Igarashi, Reiko ; Ikegawa, Yasuyo ; Kobayashi, Naohiro ; Lawson, Catherine L ; Liang, Yuhe ; Mading, Steve ; Mak, Lora ; Mir, M. Saqib ; Mukhopadhyay, Abhik ; Patwardhan, Ardan ; Persikova, Irina ; Rinaldi, Luana ; Sanz-Garcia, Eduardo ; Sekharan, Monica R ; Shao, Chenghua ; Swaminathan, G. Jawahar ; Tan, Lihua ; Ulrich, Eldon L ; van Ginkel, Glen ; Yamashita, Reiko ; Yang, Huanwang ; Zhuravleva, Marina A ; Quesada, Martha ; Kleywegt, Gerard J ; Berman, Helen M ; Markley, John L ; Nakamura, Haruki ; Velankar, Sameer ; Burley, Stephen KStructure, 07 March 2017, Vol.25(3), pp.536-545 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Validation of Structures in the Protein Data BankGore, Swanand ; Sanz García, Eduardo ; Hendrickx, Pieter M.S ; Gutmanas, Aleksandras ; Westbrook, John D ; Yang, Huanwang ; Feng, Zukang ; Baskaran, Kumaran ; Berrisford, John M ; Hudson, Brian P ; Ikegawa, Yasuyo ; Kobayashi, Naohiro ; Lawson, Catherine L ; Mading, Steve ; Mak, Lora ; Mukhopadhyay, Abhik ; Oldfield, Thomas J ; Patwardhan, Ardan ; Peisach, Ezra ; Sahni, Gaurav ; Sekharan, Monica R ; Sen, Sanchayita ; Shao, Chenghua ; Smart, Oliver S ; Ulrich, Eldon L ; Yamashita, Reiko ; Quesada, Martha ; Young, Jasmine Y ; Nakamura, Haruki ; Markley, John L ; Berman, Helen M ; Burley, Stephen K ; Velankar, Sameer ; Kleywegt, Gerard JStructure, 05 December 2017, Vol.25(12), pp.1916-1927 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB ArchiveShao, Chenghua ; Yang, Huanwang ; Westbrook, John D ; Young, Jasmine Y ; Zardecki, Christine ; Burley, Stephen KStructure, 07 March 2017, Vol.25(3), pp.458-468 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical educationBurley, Stephen K. ; Berman, Helen M. ; Christie, Cole ; Duarte, Jose M. ; Feng, Zukang ; Westbrook, John ; Young, Jasmine ; Zardecki, ChristineProtein Science, January 2018, Vol.27(1), pp.316-330 [Periódico revisado por pares]Texto completo disponível |
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Material Type: Artigo
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Data Deposition and Annotation at the Worldwide Protein Data BankDutta, Shuchismita ; Burkhardt, Kyle ; Young, Jasmine ; Swaminathan, Ganesh ; Matsuura, Takanori ; Henrick, Kim ; Nakamura, Haruki ; Berman, HelenMolecular Biotechnology, 2009, Vol.42(1), pp.1-13 [Periódico revisado por pares]Texto completo disponível |