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Refinado por: assunto: Mass Spectrometry remover
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Propagating annotations of molecular networks using in silico fragmentation
Propagating annotations of molecular networks using in silico fragmentation
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Propagating annotations of molecular networks using in silico fragmentation

da Silva, Ricardo R ; Wang, Mingxun ; Nothias, Louis-Félix ; van der Hooft, Justin J J ; Caraballo-Rodríguez, Andrés Mauricio ; Fox, Evan ; Balunas, Marcy J ; Klassen, Jonathan L ; Lopes, Norberto Peporine ; Dorrestein, Pieter C Schlessinger, Avner

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006089-e1006089 [Periódico revisado por pares]

United States: Public Library of Science

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2
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools
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MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

Ernst, Madeleine ; Kang, Kyo Bin ; Caraballo-Rodríguez, Andrés Mauricio ; Nothias, Louis-Felix ; Wandy, Joe ; Chen, Christopher ; Wang, Mingxun ; Rogers, Simon ; Medema, Marnix H ; Dorrestein, Pieter C ; van der Hooft, Justin J J

Metabolites, 2019-07, Vol.9 (7), p.144 [Periódico revisado por pares]

Switzerland: MDPI AG

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3
Mass spectrometry searches using MASST
Mass spectrometry searches using MASST
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Mass spectrometry searches using MASST

Wang, Mingxun ; Jarmusch, Alan K ; Vargas, Fernando ; Aksenov, Alexander A ; Gauglitz, Julia M ; Weldon, Kelly ; Petras, Daniel ; da Silva, Ricardo ; Quinn, Robert ; Melnik, Alexey V ; van der Hooft, Justin J J ; Caraballo-Rodríguez, Andrés Mauricio ; Nothias, Louis Felix ; Aceves, Christine M ; Panitchpakdi, Morgan ; Brown, Elizabeth ; Di Ottavio, Francesca ; Sikora, Nicole ; Elijah, Emmanuel O ; Labarta-Bajo, Lara ; Gentry, Emily C ; Shalapour, Shabnam ; Kyle, Kathleen E ; Puckett, Sara P ; Watrous, Jeramie D ; Carpenter, Carolina S ; Bouslimani, Amina ; Ernst, Madeleine ; Swafford, Austin D ; Zúñiga, Elina I ; Balunas, Marcy J ; Klassen, Jonathan L ; Loomba, Rohit ; Knight, Rob ; Bandeira, Nuno ; Dorrestein, Pieter C

Nature biotechnology, 2020-01, Vol.38 (1), p.23-26 [Periódico revisado por pares]

United States: Nature Publishing Group

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4
Protocol for community‐created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure
Protocol for community‐created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure
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Protocol for community‐created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure

Vargas, Fernando ; Weldon, Kelly C. ; Sikora, Nicole ; Wang, Mingxun ; Zhang, Zheng ; Gentry, Emily C. ; Panitchpakdi, Morgan W. ; Caraballo‐Rodríguez, Andrés Mauricio ; Dorrestein, Pieter C. ; Jarmusch, Alan K.

Rapid communications in mass spectrometry, 2020-05, Vol.34 (10), p.e8725-n/a [Periódico revisado por pares]

England: Wiley Subscription Services, Inc

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5
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery
Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery
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Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Behsaz, Bahar ; Bode, Edna ; Gurevich, Alexey ; Shi, Yan-Ni ; Grundmann, Florian ; Acharya, Deepa ; Caraballo-Rodríguez, Andrés Mauricio ; Bouslimani, Amina ; Panitchpakdi, Morgan ; Linck, Annabell ; Guan, Changhui ; Oh, Julia ; Dorrestein, Pieter C ; Bode, Helge B ; Pevzner, Pavel A ; Mohimani, Hosein

Nature communications, 2021-05, Vol.12 (1), p.3225-17, Article 3225 [Periódico revisado por pares]

England: Nature Publishing Group

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6
Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides
Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides
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Molecular inter-kingdom interactions of endophytes isolated from Lychnophora ericoides

Caraballo-Rodríguez, Andrés M ; Dorrestein, Pieter C ; Pupo, Monica T

Scientific reports, 2017-07, Vol.7 (1), p.5373-14, Article 5373 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
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Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Schmid, Robin ; Petras, Daniel ; Nothias, Louis-Félix ; Wang, Mingxun ; Aron, Allegra T ; Jagels, Annika ; Tsugawa, Hiroshi ; Rainer, Johannes ; Garcia-Aloy, Mar ; Dührkop, Kai ; Korf, Ansgar ; Pluskal, Tomáš ; Kameník, Zdeněk ; Jarmusch, Alan K ; Caraballo-Rodríguez, Andrés Mauricio ; Weldon, Kelly C ; Nothias-Esposito, Melissa ; Aksenov, Alexander A ; Bauermeister, Anelize ; Albarracin Orio, Andrea ; Grundmann, Carlismari O ; Vargas, Fernando ; Koester, Irina ; Gauglitz, Julia M ; Gentry, Emily C ; Hövelmann, Yannick ; Kalinina, Svetlana A ; Pendergraft, Matthew A ; Panitchpakdi, Morgan ; Tehan, Richard ; Le Gouellec, Audrey ; Aleti, Gajender ; Mannochio Russo, Helena ; Arndt, Birgit ; Hübner, Florian ; Hayen, Heiko ; Zhi, Hui ; Raffatellu, Manuela ; Prather, Kimberly A ; Aluwihare, Lihini I ; Böcker, Sebastian ; McPhail, Kerry L ; Humpf, Hans-Ulrich ; Karst, Uwe ; Dorrestein, Pieter C

Nature communications, 2021-06, Vol.12 (1), p.3832-3832, Article 3832 [Periódico revisado por pares]

England: Nature Publishing Group

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8
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
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Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

Bittremieux, Wout ; Avalon, Nicole E ; Thomas, Sydney P ; Kakhkhorov, Sarvar A ; Aksenov, Alexander A ; Gomes, Paulo Wender P ; Aceves, Christine M ; Caraballo-Rodríguez, Andrés Mauricio ; Gauglitz, Julia M ; Gerwick, William H ; Huan, Tao ; Jarmusch, Alan K ; Kaddurah-Daouk, Rima F ; Kang, Kyo Bin ; Kim, Hyun Woo ; Kondić, Todor ; Mannochio-Russo, Helena ; Meehan, Michael J ; Melnik, Alexey V ; Nothias, Louis-Felix ; O'Donovan, Claire ; Panitchpakdi, Morgan ; Petras, Daniel ; Schmid, Robin ; Schymanski, Emma L ; van der Hooft, Justin J J ; Weldon, Kelly C ; Yang, Heejung ; Xing, Shipei ; Zemlin, Jasmine ; Wang, Mingxun ; Dorrestein, Pieter C

Nature communications, 2023-12, Vol.14 (1), p.8488-8488, Article 8488 [Periódico revisado por pares]

England: Nature Publishing Group

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9
Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides
Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides
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Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides

Kunyavskaya, Olga ; Tagirdzhanov, Azat M. ; Caraballo-Rodríguez, Andrés Mauricio ; Nothias, Louis-Félix ; Dorrestein, Pieter C. ; Korobeynikov, Anton ; Mohimani, Hosein ; Gurevich, Alexey

Metabolites, 2021-10, Vol.11 (10), p.693 [Periódico revisado por pares]

Basel: MDPI AG

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10
Mass Spectrometry–Based Detection of Beta Lactam Hydrolysis Enables Rapid Detection of Beta Lactamase Mediated Antibiotic Resistance
Mass Spectrometry–Based Detection of Beta Lactam Hydrolysis Enables Rapid Detection of Beta Lactamase Mediated Antibiotic Resistance
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Mass Spectrometry–Based Detection of Beta Lactam Hydrolysis Enables Rapid Detection of Beta Lactamase Mediated Antibiotic Resistance

Suhandynata, Raymond T ; Lund, Kyle ; Caraballo-Rodríguez, Andrés M ; Reed, Sharon L ; Dorrestein, Pieter C ; Fitzgerald, Robert L ; Bevins, Nicholas J

Laboratory medicine, 2022-03, Vol.53 (2), p.128-137 [Periódico revisado por pares]

US: Oxford University Press

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