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Material Type: Artigo
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Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working GroupYe, Ye ; Barapatre, Seemran ; Davis, Michael K ; Elliston, Keith O ; Davatzikos, Christos ; Fedorov, Andrey ; Fillion-Robin, Jean-Christophe ; Foster, Ian ; Gilbertson, John R ; Lasso, Andras ; Miller, James V ; Morgan, Martin ; Pieper, Steve ; Raumann, Brigitte E ; Sarachan, Brion D ; Savova, Guergana ; Silverstein, Jonathan C ; Taylor, Donald P ; Zelnis, Joyce B ; Zhang, Guo-Qiang ; Cuticchia, Jamie ; Becich, Michael JJournal of medical Internet research, 2021-12, Vol.23 (12), p.e20028-e20028 [Periódico revisado por pares]Canada: Gunther Eysenbach MD MPH, Associate ProfessorTexto completo disponível |
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Material Type: Artigo
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GeoV: An Open‐Source Software Package for Quantitative Image Analysis of 3D Vesicle MorphologiesDreher, Yannik ; Niessner, Jakob ; Fink, Andreas ; Göpfrich, KerstinAdvanced intelligent systems, 2023-09, Vol.5 (9), p.n/a [Periódico revisado por pares]Weinheim: John Wiley & Sons, IncTexto completo disponível |
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Material Type: Artigo
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RITAN: rapid integration of term annotation and network resourcesZimmermann, Michael T ; Kabat, Brian ; Grill, Diane E ; Kennedy, Richard B ; Poland, Gregory APeerJ (San Francisco, CA), 2019-07, Vol.7, p.e6994-e6994, Article e6994 [Periódico revisado por pares]United States: PeerJ. LtdTexto completo disponível |
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Material Type: Artigo
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Hawk: the image reconstruction package for coherent X-ray diffractive imagingMaia, Filipe R. N. C. ; Ekeberg, Tomas ; Van Der Spoel, David ; Hajdu, JanosJournal of applied crystallography, 2010-12, Vol.43 (6), p.1535-1539 [Periódico revisado por pares]5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of CrystallographyTexto completo disponível |
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Material Type: Artigo
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Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstructionPospíšil, Jakub ; Lukeš, Tomáš ; Bendesky, Justin ; Fliegel, Karel ; Spendier, Kathrin ; Hagen, Guy MGigascience, 2019-01, Vol.8 (1) [Periódico revisado por pares]United States: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0Heirendt, Laurent ; Arreckx, Sylvain ; Pfau, Thomas ; Mendoza, Sebastián N ; Richelle, Anne ; Heinken, Almut ; Haraldsdóttir, Hulda S ; Wachowiak, Jacek ; Keating, Sarah M ; Vlasov, Vanja ; Magnusdóttir, Stefania ; Ng, Chiam Yu ; Preciat, German ; Žagare, Alise ; Chan, Siu H J ; Aurich, Maike K ; Clancy, Catherine M ; Modamio, Jennifer ; Sauls, John T ; Noronha, Alberto ; Bordbar, Aarash ; Cousins, Benjamin ; El Assal, Diana C ; Valcarcel, Luis V ; Apaolaza, Iñigo ; Ghaderi, Susan ; Ahookhosh, Masoud ; Ben Guebila, Marouen ; Kostromins, Andrejs ; Sompairac, Nicolas ; Le, Hoai M ; Ma, Ding ; Sun, Yuekai ; Wang, Lin ; Yurkovich, James T ; Oliveira, Miguel A P ; Vuong, Phan T ; El Assal, Lemmer P ; Kuperstein, Inna ; Zinovyev, Andrei ; Hinton, H Scott ; Bryant, William A ; Aragón Artacho, Francisco J ; Planes, Francisco J ; Stalidzans, Egils ; Maass, Alejandro ; Vempala, Santosh ; Hucka, Michael ; Saunders, Michael A ; Maranas, Costas D ; Lewis, Nathan E ; Sauter, Thomas ; Palsson, Bernhard Ø ; Thiele, Ines ; Fleming, Ronan M TNature protocols, 2019-03, Vol.14 (3), p.639-702 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksTrapnell, Cole ; Roberts, Adam ; Goff, Loyal ; Pertea, Geo ; Kim, Daehwan ; Kelley, David R ; Pimentel, Harold ; Salzberg, Steven L ; Rinn, John L ; Pachter, LiorNature protocols, 2012-03, Vol.7 (3), p.562-578 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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8 |
Material Type: Artigo
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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census dataMcMurdie, Paul J ; Holmes, Susan Watson, MichaelPloS one, 2013-04, Vol.8 (4), p.e61217-e61217 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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OpenMEE: Intuitive, open‐source software for meta‐analysis in ecology and evolutionary biologyWallace, Byron C. ; Lajeunesse, Marc J. ; Dietz, George ; Dahabreh, Issa J. ; Trikalinos, Thomas A. ; Schmid, Christopher H. ; Gurevitch, Jessica ; Poisot, TimothéeMethods in ecology and evolution, 2017-08, Vol.8 (8), p.941-947 [Periódico revisado por pares]London: Wiley Subscription Services, IncTexto completo disponível |
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10 |
Material Type: Artigo
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Fiji: an open-source platform for biological-image analysisSchindelin, Johannes ; Arganda-Carreras, Ignacio ; Frise, Erwin ; Kaynig, Verena ; Longair, Mark ; Pietzsch, Tobias ; Preibisch, Stephan ; Rueden, Curtis ; Saalfeld, Stephan ; Schmid, Benjamin ; Tinevez, Jean-Yves ; White, Daniel James ; Hartenstein, Volker ; Eliceiri, Kevin ; Tomancak, Pavel ; Cardona, AlbertNature methods, 2012-07, Vol.9 (7), p.676-682 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |