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Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
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Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation

Harmston, Nathan ; Ing-Simmons, Elizabeth ; Tan, Ge ; Perry, Malcolm ; Merkenschlager, Matthias ; Lenhard, Boris

Nature communications, 2017-09, Vol.8 (1), p.441-13, Article 441 [Periódico revisado por pares]

England: Nature Publishing Group

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2
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning
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Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning

Ing-Simmons, Elizabeth ; Vaid, Roshan ; Bing, Xin Yang ; Levine, Michael ; Mannervik, Mattias ; Vaquerizas, Juan M

Nature genetics, 2021-04, Vol.53 (4), p.487-499 [Periódico revisado por pares]

United States: Nature Publishing Group

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3
Ronin governs the metabolic capacity of the embryonic lineage for post‐implantation development
Ronin governs the metabolic capacity of the embryonic lineage for post‐implantation development
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Ronin governs the metabolic capacity of the embryonic lineage for post‐implantation development

Salewskij, Kirill ; Gross‐Thebing, Theresa ; Ing‐Simmons, Elizabeth ; Duethorn, Binyamin ; Rieger, Bettina ; Fan, Rui ; Chen, Rui ; Govindasamy, Niraimathi ; Brinkmann, Heike ; Kremer, Ludmila ; Kuempel‐Rink, Nannette ; Mildner, Karina ; Zeuschner, Dagmar ; Stehling, Martin ; Dejosez, Marion ; Zwaka, Thomas P ; Schöler, Hans R ; Busch, Karin B ; Vaquerizas, Juan M ; Bedzhov, Ivan

EMBO reports, 2021-11, Vol.22 (11), p.e53048-n/a [Periódico revisado por pares]

England: Blackwell Publishing Ltd

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4
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

Seitan, Vlad C ; Faure, Andre J ; Zhan, Ye ; McCord, Rachel Patton ; Lajoie, Bryan R ; Ing-Simmons, Elizabeth ; Lenhard, Boris ; Giorgetti, Luca ; Heard, Edith ; Fisher, Amanda G ; Flicek, Paul ; Dekker, Job ; Merkenschlager, Matthias

Genome research, 2013-12, Vol.23 (12), p.2066-2077 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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5
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
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Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation

Cuartero, Sergi ; Weiss, Felix D ; Dharmalingam, Gopuraja ; Guo, Ya ; Ing-Simmons, Elizabeth ; Masella, Silvia ; Robles-Rebollo, Irene ; Xiao, Xiaolin ; Wang, Yi-Fang ; Barozzi, Iros ; Djeghloul, Dounia ; Amano, Mariane T ; Niskanen, Henri ; Petretto, Enrico ; Dowell, Robin D ; Tachibana, Kikuë ; Kaikkonen, Minna U ; Nasmyth, Kim A ; Lenhard, Boris ; Natoli, Gioacchino ; Fisher, Amanda G ; Merkenschlager, Matthias

Nature immunology, 2018-09, Vol.19 (9), p.932-941 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
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Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

Ing-Simmons, Elizabeth ; Seitan, Vlad C ; Faure, Andre J ; Flicek, Paul ; Carroll, Thomas ; Dekker, Job ; Fisher, Amanda G ; Lenhard, Boris ; Merkenschlager, Matthias

Genome research, 2015-04, Vol.25 (4), p.504-513 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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7
Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation
Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation
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Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation

Ing-Simmons, Elizabeth ; Rigau, Maria ; Vaquerizas, Juan M.

Current opinion in cell biology, 2022-02, Vol.74, p.37-46 [Periódico revisado por pares]

England: Elsevier Ltd

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8
GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data
GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data
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GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data

Harmston, Nathan ; Ing-Simmons, Elizabeth ; Perry, Malcolm ; Barešić, Anja ; Lenhard, Boris

BMC genomics, 2015-11, Vol.16 (958), p.963-963, Article 963 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation
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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation

Ferreirós-Vidal, Isabel ; Carroll, Thomas ; Zhang, Tianyi ; Lagani, Vincenzo ; Ramirez, Ricardo N ; Ing-Simmons, Elizabeth ; Gómez-Valadés, Alicia G ; Cooper, Lee ; Liang, Ziwei ; Papoutsoglou, Georgios ; Dharmalingam, Gopuraja ; Guo, Ya ; Tarazona, Sonia ; Fernandes, Sunjay J ; Noori, Peri ; Silberberg, Gilad ; Fisher, Amanda G ; Tsamardinos, Ioannis ; Mortazavi, Ali ; Lenhard, Boris ; Conesa, Ana ; Tegner, Jesper ; Merkenschlager, Matthias ; Gomez-Cabrero, David Nemazee, David

PLoS Biology, 2019-04, Vol.17 (4), p.e2006506-e2006506 [Periódico revisado por pares]

United States: Public Library of Science

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10
Spatiotemporal dynamics of the Southern California Asian citrus psyllid (Diaphorina citri) invasion
Spatiotemporal dynamics of the Southern California Asian citrus psyllid (Diaphorina citri) invasion
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Spatiotemporal dynamics of the Southern California Asian citrus psyllid (Diaphorina citri) invasion

Bayles, Brett R ; Thomas, Shyam M ; Simmons, Gregory S ; Grafton-Cardwell, Elizabeth E ; Daugherty, Mathew P Wang, Zonghua

PloS one, 2017-03, Vol.12 (3), p.e0173226-e0173226 [Periódico revisado por pares]

United States: Public Library of Science

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