Protocol for community‐created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure

Vargas, Fernando ; Weldon, Kelly C. ; Sikora, Nicole ; Wang, Mingxun ; Zhang, Zheng ; Gentry, Emily C. ; Panitchpakdi, Morgan W. ; Caraballo‐Rodríguez, Andrés Mauricio ; Dorrestein, Pieter C. ; Jarmusch, Alan K.

Rapid communications in mass spectrometry, 2020-05, Vol.34 (10), p.e8725-n/a [Periódico revisado por pares]

England: Wiley Subscription Services, Inc

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Mass spectrometry searches using MASST

Wang, Mingxun ; Jarmusch, Alan K ; Vargas, Fernando ; Aksenov, Alexander A ; Gauglitz, Julia M ; Weldon, Kelly ; Petras, Daniel ; da Silva, Ricardo ; Quinn, Robert ; Melnik, Alexey V ; van der Hooft, Justin J J ; Caraballo-Rodríguez, Andrés Mauricio ; Nothias, Louis Felix ; Aceves, Christine M ; Panitchpakdi, Morgan ; Brown, Elizabeth ; Di Ottavio, Francesca ; Sikora, Nicole ; Elijah, Emmanuel O ; Labarta-Bajo, Lara ; Gentry, Emily C ; Shalapour, Shabnam ; Kyle, Kathleen E ; Puckett, Sara P ; Watrous, Jeramie D ; Carpenter, Carolina S ; Bouslimani, Amina ; Ernst, Madeleine ; Swafford, Austin D ; Zúñiga, Elina I ; Balunas, Marcy J ; Klassen, Jonathan L ; Loomba, Rohit ; Knight, Rob ; Bandeira, Nuno ; Dorrestein, Pieter C

Nature biotechnology, 2020-01, Vol.38 (1), p.23-26 [Periódico revisado por pares]

United States: Nature Publishing Group

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Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

Gauglitz, Julia M. ; Aceves, Christine M. ; Aksenov, Alexander A. ; Aleti, Gajender ; Almaliti, Jehad ; Bouslimani, Amina ; Brown, Elizabeth A. ; Campeau, Anaamika ; Caraballo-Rodríguez, Andrés Mauricio ; Chaar, Rama ; da Silva, Ricardo R. ; Demko, Alyssa M. ; Di Ottavio, Francesca ; Elijah, Emmanuel ; Ernst, Madeleine ; Ferguson, L. Paige ; Holmes, Xavier ; Jarmusch, Alan K. ; Jiang, Lingjing ; Kang, Kyo Bin ; Koester, Irina ; Kwan, Brian ; Li, Jie ; Li, Yueying ; Melnik, Alexey V. ; Molina-Santiago, Carlos ; Ni, Bohan ; Oom, Aaron L. ; Panitchpakdi, Morgan W. ; Petras, Daniel ; Quinn, Robert ; Sikora, Nicole ; Spengler, Katharina ; Teke, Bahar ; Tripathi, Anupriya ; Ul-Hasan, Sabah ; van der Hooft, Justin J.J. ; Vargas, Fernando ; Vrbanac, Alison ; Vu, Anthony Q. ; Wang, Steven C. ; Weldon, Kelly ; Wilson, Kayla ; Wozniak, Jacob M. ; Yoon, Michael ; Bandeira, Nuno ; Dorrestein, Pieter C.

Food chemistry, 2020-01, Vol.302, p.125290-125290, Article 125290 [Periódico revisado por pares]

England: Elsevier Ltd

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Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Aron, Allegra T ; Gentry, Emily C ; McPhail, Kerry L ; Nothias, Louis-Félix ; Nothias-Esposito, Mélissa ; Bouslimani, Amina ; Petras, Daniel ; Gauglitz, Julia M ; Sikora, Nicole ; Vargas, Fernando ; van der Hooft, Justin J J ; Ernst, Madeleine ; Kang, Kyo Bin ; Aceves, Christine M ; Caraballo-Rodríguez, Andrés Mauricio ; Koester, Irina ; Weldon, Kelly C ; Bertrand, Samuel ; Roullier, Catherine ; Sun, Kunyang ; Tehan, Richard M ; Boya P, Cristopher A ; Christian, Martin H ; Gutiérrez, Marcelino ; Ulloa, Aldo Moreno ; Tejeda Mora, Javier Andres ; Mojica-Flores, Randy ; Lakey-Beitia, Johant ; Vásquez-Chaves, Victor ; Zhang, Yilue ; Calderón, Angela I ; Tayler, Nicole ; Keyzers, Robert A ; Tugizimana, Fidele ; Ndlovu, Nombuso ; Aksenov, Alexander A ; Jarmusch, Alan K ; Schmid, Robin ; Truman, Andrew W ; Bandeira, Nuno ; Wang, Mingxun ; Dorrestein, Pieter C

Nature protocols, 2020-06, Vol.15 (6), p.1954-1991 [Periódico revisado por pares]

England: Nature Publishing Group

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ReDU: A Framework to Find and Re-analyze Public Mass Spectrometry Data

Jarmusch, Alan K. ; Wang, Mingxun ; Aceves, Christine M. ; Advani, Rohit S. ; Aguirre, Shaden ; Aksenov, Alexander A. ; Aleti, Gajender ; Aron, Allegra T. ; Bauermeister, Anelize ; Bolleddu, Sanjana ; Bouslimani, Amina ; Caraballo Rodriguez, Andres Mauricio ; Chaar, Rama ; Coras, Roxana ; Elijah, Emmanuel O. ; Ernst, Madeleine ; Gauglitz, Julia M. ; Gentry, Emily C. ; Husband, Makhai ; Jarmusch, Scott A. ; Jones, Kenneth L. ; Kamenik, Zdenek ; Gouellec, Audrey Le ; Lu, Aileen ; McCall, Laura-Isobel ; McPhail, Kerry L. ; Meehan, Michael J. ; Melnik, Alexey V. ; Menezes, Riya C. ; Montoya Giraldo, Yessica Alejandra ; Nguyen, Ngoc Hung ; Nothias, Louis Felix ; Nothias-Esposito, Mélissa ; Panitchpakdi, Morgan ; Petras, Daniel ; Quinn, Robert ; Sikora, Nicole ; van der Hooft, Justin J.J. ; Vargas, Fernando ; Vrbanac, Alison ; Weldon, Kelly ; Knight, Rob ; Bandeira, Nuno ; Dorrestein, Pieter C.

Nature methods, 2020-08, Vol.17 (9), p.901-904 [Periódico revisado por pares]

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ReDU: a framework to find and reanalyze public mass spectrometry data

Jarmusch, Alan K ; Wang, Mingxun ; Aceves, Christine M ; Advani, Rohit S ; Aguirre, Shaden ; Aksenov, Alexander A ; Aleti, Gajender ; Aron, Allegra T ; Bauermeister, Anelize ; Bolleddu, Sanjana ; Bouslimani, Amina ; Caraballo Rodriguez, Andres Mauricio ; Chaar, Rama ; Coras, Roxana ; Elijah, Emmanuel O ; Ernst, Madeleine ; Gauglitz, Julia M ; Gentry, Emily C ; Husband, Makhai ; Jarmusch, Scott A ; Jones, Kenneth L ; Kamenik, Zdenek ; Le Gouellec, Audrey ; Lu, Aileen ; McCall, Laura-Isobel ; McPhail, Kerry L ; Meehan, Michael J ; Melnik, Alexey V ; Menezes, Riya C ; Montoya Giraldo, Yessica Alejandra ; Nguyen, Ngoc Hung ; Nothias, Louis Felix ; Nothias-Esposito, Mélissa ; Panitchpakdi, Morgan ; Petras, Daniel ; Quinn, Robert A ; Sikora, Nicole ; van der Hooft, Justin JJ ; Vargas, Fernando ; Vrbanac, Alison ; Weldon, Kelly C ; Knight, Rob ; Bandeira, Nuno ; Dorrestein, Pieter C

Nature Methods, 2020-09, Vol.17 (9), p.901-904

eScholarship, University of California

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