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Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
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Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Li, Bo ; Gould, Joshua ; Yang, Yiming ; Sarkizova, Siranush ; Tabaka, Marcin ; Ashenberg, Orr ; Rosen, Yanay ; Slyper, Michal ; Kowalczyk, Monika S ; Villani, Alexandra-Chloé ; Tickle, Timothy ; Hacohen, Nir ; Rozenblatt-Rosen, Orit ; Regev, Aviv

Nature methods, 2020-08, Vol.17 (8), p.793-798 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Metrics for rapid quality control in RNA structure probing experiments
Metrics for rapid quality control in RNA structure probing experiments
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Metrics for rapid quality control in RNA structure probing experiments

Choudhary, Krishna ; Shih, Nathan P ; Deng, Fei ; Ledda, Mirko ; Li, Bo ; Aviran, Sharon

Bioinformatics (Oxford, England), 2016-12, Vol.32 (23), p.3575-3583 [Periódico revisado por pares]

England: Oxford University Press

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3
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Haas, Brian J ; Papanicolaou, Alexie ; Yassour, Moran ; Grabherr, Manfred ; Blood, Philip D ; Bowden, Joshua ; Couger, Matthew Brian ; Eccles, David ; Li, Bo ; Lieber, Matthias ; MacManes, Matthew D ; Ott, Michael ; Orvis, Joshua ; Pochet, Nathalie ; Strozzi, Francesco ; Weeks, Nathan ; Westerman, Rick ; William, Thomas ; Dewey, Colin N ; Henschel, Robert ; LeDuc, Richard D ; Friedman, Nir ; Regev, Aviv

Nature protocols, 2013-08, Vol.8 (8), p.1494-1512 [Periódico revisado por pares]

England: Nature Publishing Group

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4
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
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Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

Haas, Brian J ; Dobin, Alexander ; Li, Bo ; Stransky, Nicolas ; Pochet, Nathalie ; Regev, Aviv

Genome Biology, 2019-10, Vol.20 (1), p.213-213, Article 213 [Periódico revisado por pares]

England: BioMed Central Ltd

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5
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
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A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Slyper, Michal ; Porter, Caroline B M ; Ashenberg, Orr ; Waldman, Julia ; Drokhlyansky, Eugene ; Wakiro, Isaac ; Smillie, Christopher ; Smith-Rosario, Gabriela ; Wu, Jingyi ; Dionne, Danielle ; Vigneau, Sébastien ; Jané-Valbuena, Judit ; Tickle, Timothy L ; Napolitano, Sara ; Su, Mei-Ju ; Patel, Anand G ; Karlstrom, Asa ; Gritsch, Simon ; Nomura, Masashi ; Waghray, Avinash ; Gohil, Satyen H ; Tsankov, Alexander M ; Jerby-Arnon, Livnat ; Cohen, Ofir ; Klughammer, Johanna ; Rosen, Yanay ; Gould, Joshua ; Nguyen, Lan ; Hofree, Matan ; Tramontozzi, Peter J ; Li, Bo ; Wu, Catherine J ; Izar, Benjamin ; Haq, Rizwan ; Hodi, F Stephen ; Yoon, Charles H ; Hata, Aaron N ; Baker, Suzanne J ; Suvà, Mario L ; Bueno, Raphael ; Stover, Elizabeth H ; Clay, Michael R ; Dyer, Michael A ; Collins, Natalie B ; Matulonis, Ursula A ; Wagle, Nikhil ; Johnson, Bruce E ; Rotem, Asaf ; Rozenblatt-Rosen, Orit ; Regev, Aviv

Nature medicine, 2020-05, Vol.26 (5), p.792-802 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Evaluation of de novo transcriptome assemblies from RNA-Seq data
Evaluation of de novo transcriptome assemblies from RNA-Seq data
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Evaluation of de novo transcriptome assemblies from RNA-Seq data

Li, Bo ; Fillmore, Nathanael ; Bai, Yongsheng ; Collins, Mike ; Thomson, James A ; Stewart, Ron ; Dewey, Colin N

Genome Biology (Online Edition), 2014-12, Vol.15 (12), p.553-553, Article 553 [Periódico revisado por pares]

England: BioMed Central Ltd

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7
Comparative analysis of sequencing technologies for single-cell transcriptomics
Comparative analysis of sequencing technologies for single-cell transcriptomics
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Comparative analysis of sequencing technologies for single-cell transcriptomics

Natarajan, Kedar Nath ; Miao, Zhichao ; Jiang, Miaomiao ; Huang, Xiaoyun ; Zhou, Hongpo ; Xie, Jiarui ; Wang, Chunqing ; Qin, Shishang ; Zhao, Zhikun ; Wu, Liang ; Yang, Naibo ; Li, Bo ; Hou, Yong ; Liu, Shiping ; Teichmann, Sarah A

Genome Biology, 2019-04, Vol.20 (1), p.70-70, Article 70 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Li, Bo ; Dewey, Colin N

BMC bioinformatics, 2011-08, Vol.12 (1), p.323-323, Article 323 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
Landscape of B cell immunity and related immune evasion in human cancers
Landscape of B cell immunity and related immune evasion in human cancers
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Landscape of B cell immunity and related immune evasion in human cancers

Hu, Xihao ; Zhang, Jian ; Wang, Jin ; Fu, Jingxin ; Li, Taiwen ; Zheng, Xiaoqi ; Wang, Binbin ; Gu, Shengqing ; Jiang, Peng ; Fan, Jingyu ; Ying, Xiaomin ; Zhang, Jing ; Carroll, Michael C ; Wucherpfennig, Kai W ; Hacohen, Nir ; Zhang, Fan ; Zhang, Peng ; Liu, Jun S ; Li, Bo ; Liu, X Shirley

Nature genetics, 2019-03, Vol.51 (3), p.560-567 [Periódico revisado por pares]

United States: Nature Publishing Group

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10
RNA-Seq gene expression estimation with read mapping uncertainty
RNA-Seq gene expression estimation with read mapping uncertainty
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RNA-Seq gene expression estimation with read mapping uncertainty

Li, Bo ; Ruotti, Victor ; Stewart, Ron M. ; Thomson, James A. ; Dewey, Colin N.

Bioinformatics, 2010-02, Vol.26 (4), p.493-500 [Periódico revisado por pares]

Oxford: Oxford University Press

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