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Reproducible molecular networking of untargeted mass spectrometry data using GNPS
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
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Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Aron, Allegra T ; Gentry, Emily C ; McPhail, Kerry L ; Nothias, Louis-Félix ; Nothias-Esposito, Mélissa ; Bouslimani, Amina ; Petras, Daniel ; Gauglitz, Julia M ; Sikora, Nicole ; Vargas, Fernando ; van der Hooft, Justin J J ; Ernst, Madeleine ; Kang, Kyo Bin ; Aceves, Christine M ; Caraballo-Rodríguez, Andrés Mauricio ; Koester, Irina ; Weldon, Kelly C ; Bertrand, Samuel ; Roullier, Catherine ; Sun, Kunyang ; Tehan, Richard M ; Boya P, Cristopher A ; Christian, Martin H ; Gutiérrez, Marcelino ; Ulloa, Aldo Moreno ; Tejeda Mora, Javier Andres ; Mojica-Flores, Randy ; Lakey-Beitia, Johant ; Vásquez-Chaves, Victor ; Zhang, Yilue ; Calderón, Angela I ; Tayler, Nicole ; Keyzers, Robert A ; Tugizimana, Fidele ; Ndlovu, Nombuso ; Aksenov, Alexander A ; Jarmusch, Alan K ; Schmid, Robin ; Truman, Andrew W ; Bandeira, Nuno ; Wang, Mingxun ; Dorrestein, Pieter C

Nature protocols, 2020-06, Vol.15 (6), p.1954-1991 [Periódico revisado por pares]

England: Nature Publishing Group

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2
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
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Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Schmid, Robin ; Petras, Daniel ; Nothias, Louis-Félix ; Wang, Mingxun ; Aron, Allegra T ; Jagels, Annika ; Tsugawa, Hiroshi ; Rainer, Johannes ; Garcia-Aloy, Mar ; Dührkop, Kai ; Korf, Ansgar ; Pluskal, Tomáš ; Kameník, Zdeněk ; Jarmusch, Alan K ; Caraballo-Rodríguez, Andrés Mauricio ; Weldon, Kelly C ; Nothias-Esposito, Melissa ; Aksenov, Alexander A ; Bauermeister, Anelize ; Albarracin Orio, Andrea ; Grundmann, Carlismari O ; Vargas, Fernando ; Koester, Irina ; Gauglitz, Julia M ; Gentry, Emily C ; Hövelmann, Yannick ; Kalinina, Svetlana A ; Pendergraft, Matthew A ; Panitchpakdi, Morgan ; Tehan, Richard ; Le Gouellec, Audrey ; Aleti, Gajender ; Mannochio Russo, Helena ; Arndt, Birgit ; Hübner, Florian ; Hayen, Heiko ; Zhi, Hui ; Raffatellu, Manuela ; Prather, Kimberly A ; Aluwihare, Lihini I ; Böcker, Sebastian ; McPhail, Kerry L ; Humpf, Hans-Ulrich ; Karst, Uwe ; Dorrestein, Pieter C

Nature communications, 2021-06, Vol.12 (1), p.3832-3832, Article 3832 [Periódico revisado por pares]

England: Nature Publishing Group

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3
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
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Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages

Gauglitz, Julia M. ; Aceves, Christine M. ; Aksenov, Alexander A. ; Aleti, Gajender ; Almaliti, Jehad ; Bouslimani, Amina ; Brown, Elizabeth A. ; Campeau, Anaamika ; Caraballo-Rodríguez, Andrés Mauricio ; Chaar, Rama ; da Silva, Ricardo R. ; Demko, Alyssa M. ; Di Ottavio, Francesca ; Elijah, Emmanuel ; Ernst, Madeleine ; Ferguson, L. Paige ; Holmes, Xavier ; Jarmusch, Alan K. ; Jiang, Lingjing ; Kang, Kyo Bin ; Koester, Irina ; Kwan, Brian ; Li, Jie ; Li, Yueying ; Melnik, Alexey V. ; Molina-Santiago, Carlos ; Ni, Bohan ; Oom, Aaron L. ; Panitchpakdi, Morgan W. ; Petras, Daniel ; Quinn, Robert ; Sikora, Nicole ; Spengler, Katharina ; Teke, Bahar ; Tripathi, Anupriya ; Ul-Hasan, Sabah ; van der Hooft, Justin J.J. ; Vargas, Fernando ; Vrbanac, Alison ; Vu, Anthony Q. ; Wang, Steven C. ; Weldon, Kelly ; Wilson, Kayla ; Wozniak, Jacob M. ; Yoon, Michael ; Bandeira, Nuno ; Dorrestein, Pieter C.

Food chemistry, 2020-01, Vol.302, p.125290-125290, Article 125290 [Periódico revisado por pares]

England: Elsevier Ltd

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4
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, Evan ; Rideout, Jai Ram ; Dillon, Matthew R ; Bokulich, Nicholas A ; Abnet, Christian C ; Al-Ghalith, Gabriel A ; Alexander, Harriet ; Alm, Eric J ; Arumugam, Manimozhiyan ; Asnicar, Francesco ; Bai, Yang ; Bittinger, Kyle ; Brejnrod, Asker ; Brislawn, Colin J ; Brown, C Titus ; Callahan, Benjamin J ; Caraballo-Rodríguez, Andrés Mauricio ; Chase, John ; Cope, Emily K ; Diener, Christian ; Dorrestein, Pieter C ; Douglas, Gavin M ; Durall, Daniel M ; Duvallet, Claire ; Edwardson, Christian F ; Estaki, Mehrbod ; Fouquier, Jennifer ; Gauglitz, Julia M ; Gibson, Deanna L ; Gonzalez, Antonio ; Gorlick, Kestrel ; Guo, Jiarong ; Holmes, Susan ; Holste, Hannes ; Huttenhower, Curtis ; Huttley, Gavin A ; Janssen, Stefan ; Jarmusch, Alan K ; Jiang, Lingjing ; Kaehler, Benjamin D ; Kang, Kyo Bin ; Keefe, Christopher R ; Keim, Paul ; Kelley, Scott T ; Knights, Dan ; Koester, Irina ; Kosciolek, Tomasz ; Kreps, Jorden ; Langille, Morgan G I ; Lee, Joslynn ; Ley, Ruth ; Liu, Yong-Xin ; Loftfield, Erikka ; Lozupone, Catherine ; Maher, Massoud ; Marotz, Clarisse ; Martin, Bryan D ; McDonald, Daniel ; Melnik, Alexey V ; Morgan, Sydney C ; Morton, Jamie T ; Naimey, Ahmad Turan ; Navas-Molina, Jose A ; Nothias, Louis Felix ; Orchanian, Stephanie B ; Pearson, Talima ; Peoples, Samuel L ; Petras, Daniel ; Preuss, Mary Lai ; Rasmussen, Lasse Buur ; Robeson, 2nd, Michael S ; Rosenthal, Patrick ; Segata, Nicola ; Shaffer, Michael ; Song, Se Jin ; Spear, John R ; Swafford, Austin D ; Thompson, Luke R ; Torres, Pedro J ; Trinh, Pauline ; Tripathi, Anupriya ; Turnbaugh, Peter J ; Ul-Hasan, Sabah ; van der Hooft, Justin J J ; Vargas, Fernando ; Vázquez-Baeza, Yoshiki ; Vogtmann, Emily ; von Hippel, Max ; Walters, William ; Wan, Yunhu ; Wang, Mingxun ; Weber, Kyle C ; Williamson, Charles H D ; Willis, Amy D ; Xu, Zhenjiang Zech ; Zaneveld, Jesse R ; Zhang, Yilong ; Zhu, Qiyun ; Knight, Rob ; Caporaso, J Gregory

Nature biotechnology, 2019-08, Vol.37 (8), p.852-857 [Periódico revisado por pares]

United States: Nature Publishing Group

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5
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
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Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Schmid, Robin ; Petras, Daniel ; Nothias, Louis-Félix ; Wang, Mingxun ; Aron, Allegra T ; Jagels, Annika ; Tsugawa, Hiroshi ; Rainer, Johannes ; Garcia-Aloy, Mar ; Dührkop, Kai ; Korf, Ansgar ; Pluskal, Tomáš ; Kameník, Zdeněk ; Jarmusch, Alan K ; Caraballo-Rodríguez, Andrés Mauricio ; Weldon, Kelly C ; Nothias-Esposito, Melissa ; Aksenov, Alexander A ; Bauermeister, Anelize ; Albarracin Orio, Andrea ; Grundmann, Carlismari O ; Vargas, Fernando ; Koester, Irina ; Gauglitz, Julia M ; Gentry, Emily C ; Hövelmann, Yannick ; Kalinina, Svetlana A ; Pendergraft, Matthew A ; Panitchpakdi, Morgan ; Tehan, Richard ; Le Gouellec, Audrey ; Aleti, Gajender ; Mannochio Russo, Helena ; Arndt, Birgit ; Hübner, Florian ; Hayen, Heiko ; Zhi, Hui ; Raffatellu, Manuela ; Prather, Kimberly A ; Aluwihare, Lihini I ; Böcker, Sebastian ; McPhail, Kerry L ; Humpf, Hans-Ulrich ; Karst, Uwe ; Dorrestein, Pieter C

Nature Communications, 2021-01, Vol.12 (1)

eScholarship, University of California

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6
Feature-based molecular networking in the GNPS analysis environment
Feature-based molecular networking in the GNPS analysis environment
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Feature-based molecular networking in the GNPS analysis environment

Nothias, Louis-Félix ; Petras, Daniel ; Schmid, Robin ; Dührkop, Kai ; Rainer, Johannes ; Sarvepalli, Abinesh ; Protsyuk, Ivan ; Ernst, Madeleine ; Tsugawa, Hiroshi ; Fleischauer, Markus ; Aicheler, Fabian ; Aksenov, Alexander A ; Alka, Oliver ; Allard, Pierre-Marie ; Barsch, Aiko ; Cachet, Xavier ; Caraballo-Rodriguez, Andres Mauricio ; Da Silva, Ricardo R ; Dang, Tam ; Garg, Neha ; Gauglitz, Julia M ; Gurevich, Alexey ; Isaac, Giorgis ; Jarmusch, Alan K ; Kameník, Zdeněk ; Kang, Kyo Bin ; Kessler, Nikolas ; Koester, Irina ; Korf, Ansgar ; Le Gouellec, Audrey ; Ludwig, Marcus ; Martin H., Christian ; McCall, Laura-Isobel ; McSayles, Jonathan ; Meyer, Sven W ; Mohimani, Hosein ; Morsy, Mustafa ; Moyne, Oriane ; Neumann, Steffen ; Neuweger, Heiko ; Nguyen, Ngoc Hung ; Nothias-Esposito, Melissa ; Paolini, Julien ; Phelan, Vanessa V ; Pluskal, Tomáš ; Quinn, Robert A ; Rogers, Simon ; Shrestha, Bindesh ; Tripathi, Anupriya ; van der Hooft, Justin JJ ; Vargas, Fernando ; Weldon, Kelly C ; Witting, Michael ; Yang, Heejung ; Zhang, Zheng ; Zubeil, Florian ; Kohlbacher, Oliver ; Böcker, Sebastian ; Alexandrov, Theodore ; Bandeira, Nuno ; Wang, Mingxun ; Dorrestein, Pieter C

Nature Methods, 2020-09, Vol.17 (9), p.905-908

eScholarship, University of California

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