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Integrative detection and analysis of structural variation in cancer genomes
Integrative detection and analysis of structural variation in cancer genomes
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Integrative detection and analysis of structural variation in cancer genomes

Dixon, Jesse R ; Xu, Jie ; Dileep, Vishnu ; Zhan, Ye ; Song, Fan ; Le, Victoria T ; Yardımcı, Galip Gürkan ; Chakraborty, Abhijit ; Bann, Darrin V ; Wang, Yanli ; Clark, Royden ; Zhang, Lijun ; Yang, Hongbo ; Liu, Tingting ; Iyyanki, Sriranga ; An, Lin ; Pool, Christopher ; Sasaki, Takayo ; Rivera-Mulia, Juan Carlos ; Ozadam, Hakan ; Lajoie, Bryan R ; Kaul, Rajinder ; Buckley, Michael ; Lee, Kristen ; Diegel, Morgan ; Pezic, Dubravka ; Ernst, Christina ; Hadjur, Suzana ; Odom, Duncan T ; Stamatoyannopoulos, John A ; Broach, James R ; Hardison, Ross C ; Ay, Ferhat ; Noble, William Stafford ; Dekker, Job ; Gilbert, David M ; Yue, Feng

Nature genetics, 2018-10, Vol.50 (10), p.1388-1398 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Condensin-driven remodelling of X chromosome topology during dosage compensation
Condensin-driven remodelling of X chromosome topology during dosage compensation
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Condensin-driven remodelling of X chromosome topology during dosage compensation

Crane, Emily ; Bian, Qian ; McCord, Rachel Patton ; Lajoie, Bryan R ; Wheeler, Bayly S ; Ralston, Edward J ; Uzawa, Satoru ; Dekker, Job ; Meyer, Barbara J

Nature (London), 2015-07, Vol.523 (7559), p.240-244 [Periódico revisado por pares]

England: Nature Publishing Group

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3
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

Imakaev, Maxim ; Fudenberg, Geoffrey ; McCord, Rachel Patton ; Naumova, Natalia ; Goloborodko, Anton ; Lajoie, Bryan R ; Dekker, Job ; Mirny, Leonid A

Nature methods, 2012-10, Vol.9 (10), p.999-1003 [Periódico revisado por pares]

United States: Nature Publishing Group

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4
Hi–C: A comprehensive technique to capture the conformation of genomes
Hi–C: A comprehensive technique to capture the conformation of genomes
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Hi–C: A comprehensive technique to capture the conformation of genomes

Belton, Jon-Matthew ; McCord, Rachel Patton ; Gibcus, Johan Harmen ; Naumova, Natalia ; Zhan, Ye ; Dekker, Job

Methods (San Diego, Calif.), 2012-11, Vol.58 (3), p.268-276 [Periódico revisado por pares]

United States: Elsevier Inc

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5
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Lieberman-Aiden, Erez ; van Berkum, Nynke L ; Williams, Louise ; Imakaev, Maxim ; Ragoczy, Tobias ; Telling, Agnes ; Amit, Ido ; Lajoie, Bryan R ; Sabo, Peter J ; Dorschner, Michael O ; Sandstrom, Richard ; Bernstein, Bradley ; Bender, M.A ; Groudine, Mark ; Gnirke, Andreas ; Stamatoyannopoulos, John ; Mirny, Leonid A ; Lander, Eric S ; Dekker, Job

Science (American Association for the Advancement of Science), 2009-10, Vol.326 (5950), p.289-293 [Periódico revisado por pares]

Washington, DC: American Association for the Advancement of Science

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6
Measuring the reproducibility and quality of Hi-C data
Measuring the reproducibility and quality of Hi-C data
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Measuring the reproducibility and quality of Hi-C data

Yardımcı, Galip Gürkan ; Ozadam, Hakan ; Sauria, Michael E G ; Ursu, Oana ; Yan, Koon-Kiu ; Yang, Tao ; Chakraborty, Abhijit ; Kaul, Arya ; Lajoie, Bryan R ; Song, Fan ; Zhan, Ye ; Ay, Ferhat ; Gerstein, Mark ; Kundaje, Anshul ; Li, Qunhua ; Taylor, James ; Yue, Feng ; Dekker, Job ; Noble, William S

Genome Biology, 2019-03, Vol.20 (1), p.57-57, Article 57 [Periódico revisado por pares]

England: BioMed Central Ltd

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7
Hi-C: a method to study the three-dimensional architecture of genomes
Hi-C: a method to study the three-dimensional architecture of genomes
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Hi-C: a method to study the three-dimensional architecture of genomes

van Berkum, Nynke L ; Lieberman-Aiden, Erez ; Williams, Louise ; Imakaev, Maxim ; Gnirke, Andreas ; Mirny, Leonid A ; Dekker, Job ; Lander, Eric S

Journal of visualized experiments, 2010-05 (39) [Periódico revisado por pares]

United States: MyJove Corporation

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8
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening
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Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening

D'haene, Barbara ; Attanasio, Catia ; Beysen, Diane ; Dostie, Josée ; Lemire, Edmond ; Bouchard, Philippe ; Field, Michael ; Jones, Kristie ; Lorenz, Birgit ; Menten, Björn ; Buysse, Karen ; Pattyn, Filip ; Friedli, Marc ; Ucla, Catherine ; Rossier, Colette ; Wyss, Carine ; Speleman, Frank ; De Paepe, Anne ; Dekker, Job ; Antonarakis, Stylianos E ; De Baere, Elfride Horwitz, Marshall S.

PLoS genetics, 2009-06, Vol.5 (6), p.e1000522 [Periódico revisado por pares]

United States: Public Library of Science

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9
High-throughput genome scaffolding from in vivo DNA interaction frequency
High-throughput genome scaffolding from in vivo DNA interaction frequency
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High-throughput genome scaffolding from in vivo DNA interaction frequency

Kaplan, Noam ; Dekker, Job

Nature biotechnology, 2013-12, Vol.31 (12), p.1143-1147 [Periódico revisado por pares]

United States: Nature Publishing Group

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10
RNA-mediated symmetry breaking enables singular olfactory receptor choice
RNA-mediated symmetry breaking enables singular olfactory receptor choice
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RNA-mediated symmetry breaking enables singular olfactory receptor choice

Pourmorady, Ariel D ; Bashkirova, Elizaveta V ; Chiariello, Andrea M ; Belagzhal, Houda ; Kodra, Albana ; Duffié, Rachel ; Kahiapo, Jerome ; Monahan, Kevin ; Pulupa, Joan ; Schieren, Ira ; Osterhoudt, Alexa ; Dekker, Job ; Nicodemi, Mario ; Lomvardas, Stavros

Nature (London), 2024-01, Vol.625 (7993), p.181-188 [Periódico revisado por pares]

England: Nature Publishing Group

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