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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Haendiges, Julie ; Davidson, Gordon R ; Pettengill, James B ; Reed, Elizabeth ; Ramachandran, Padmini ; Blessington, Tyann ; Miller, Jesse D ; Anderson, Nathan ; Myoda, Sam ; Brown, Eric W ; Zheng, Jie ; Tikekar, Rohan ; Hoffmann, Maria Mossong, Joël

PloS one, 2021-11, Vol.16 (11), p.e0259471 [Periódico revisado por pares]

United States: Public Library of Science

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2
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence
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The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence

Pettengill, James B Lumbsch, Helge Thorsten

PloS one, 2015-08, Vol.10 (8), p.e0128407-e0128407 [Periódico revisado por pares]

United States: Public Library of Science

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3
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
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CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data

Davis, Steve ; Pettengill, James B ; Luo, Yan ; Payne, Justin ; Shpuntoff, Al ; Rand, Hugh ; Strain, Errol

PeerJ. Computer science, 2015-08, Vol.1, p.e20 [Periódico revisado por pares]

San Diego: PeerJ. Ltd

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4
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Pettengill, James B ; Pightling, Arthur W ; Baugher, Joseph D ; Rand, Hugh ; Strain, Errol Tang, Haixu

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162 [Periódico revisado por pares]

United States: Public Library of Science

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5
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
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Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

Pightling, Arthur W ; Pettengill, James B ; Wang, Yu ; Rand, Hugh ; Strain, Errol

Genome Biology, 2019-12, Vol.20 (1), p.286-286, Article 286 [Periódico revisado por pares]

England: BioMed Central Ltd

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6
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
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Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere

Ottesen, Andrea R ; Gonzalez, Antonio ; Bell, Rebecca ; Arce, Caroline ; Rideout, Steven ; Allard, Marc ; Evans, Peter ; Strain, Errol ; Musser, Steven ; Knight, Rob ; Brown, Eric ; Pettengill, James B Chang, Yung-Fu

PloS one, 2013-09, Vol.8 (9), p.e73079 [Periódico revisado por pares]

United States: Public Library of Science

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7
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation
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Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

Commichaux, Seth ; Rand, Hugh ; Javkar, Kiran ; Molloy, Erin K ; Pettengill, James B ; Pightling, Arthur ; Hoffmann, Maria ; Pop, Mihai ; Jayeola, Victor ; Foley, Steven ; Luo, Yan

BMC genomics, 2023-04, Vol.24 (1), p.165-165, Article 165 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection
Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection
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Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection

Pettengill, James B ; McAvoy, Eugene ; White, James R ; Allard, Marc ; Brown, Eric ; Ottesen, Andrea

BMC research notes, 2012-07, Vol.5 (1), p.378-378, Article 378 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing
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Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing

Cao, Guojie ; Meng, Jianghong ; Strain, Errol ; Stones, Robert ; Pettengill, James ; Zhao, Shaohua ; McDermott, Patrick ; Brown, Eric ; Allard, Marc Planet, Paul J.

PloS one, 2013-02, Vol.8 (2), p.e55687-e55687 [Periódico revisado por pares]

United States: Public Library of Science

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10
Segal's Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project
Segal's Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project
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Segal's Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project

Pettengill, James B ; Rand, Hugh

PeerJ (San Francisco, CA), 2017-06, Vol.5, p.e3480-e3480, Article e3480 [Periódico revisado por pares]

United States: PeerJ. Ltd

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