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Refinado por: Base de dados/Biblioteca: Single Journals remover
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1
Meta-analyses of studies of the human microbiota
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Artigo
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Meta-analyses of studies of the human microbiota

Lozupone, Catherine A ; Stombaugh, Jesse ; Gonzalez, Antonio ; Ackermann, Gail ; Wendel, Doug ; Vázquez-Baeza, Yoshiki ; Jansson, Janet K ; Gordon, Jeffrey I ; Knight, Rob

Genome research, 2013-10, Vol.23 (10), p.1704-1714 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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2
Longitudinal analysis of microbial interaction between humans and the indoor environment
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Artigo
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Longitudinal analysis of microbial interaction between humans and the indoor environment

Lax, Simon ; Smith, Daniel P. ; Hampton-Marcell, Jarrad ; Owens, Sarah M. ; Handley, Kim M. ; Scott, Nicole M. ; Gibbons, Sean M. ; Larsen, Peter ; Shogan, Benjamin D. ; Weiss, Sophie ; Metcalf, Jessica L. ; Ursell, Luke K. ; Vázquez-Baeza, Yoshiki ; Van Treuren, Will ; Hasan, Nur A. ; Gibson, Molly K. ; Colwell, Rita ; Dantas, Gautam ; Knight, Rob ; Gilbert, Jack A.

Science (American Association for the Advancement of Science), 2014-08, Vol.345 (6200), p.1048-1052 [Periódico revisado por pares]

United States: American Association for the Advancement of Science

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3
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
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Artigo
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Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

Lloyd-Price, Jason ; Arze, Cesar ; Ananthakrishnan, Ashwin N ; Schirmer, Melanie ; Avila-Pacheco, Julian ; Poon, Tiffany W ; Andrews, Elizabeth ; Ajami, Nadim J ; Bonham, Kevin S ; Brislawn, Colin J ; Casero, David ; Courtney, Holly ; Gonzalez, Antonio ; Graeber, Thomas G ; Hall, A Brantley ; Lake, Kathleen ; Landers, Carol J ; Mallick, Himel ; Plichta, Damian R ; Prasad, Mahadev ; Rahnavard, Gholamali ; Sauk, Jenny ; Shungin, Dmitry ; Vázquez-Baeza, Yoshiki ; White, 3rd, Richard A ; Braun, Jonathan ; Denson, Lee A ; Jansson, Janet K ; Knight, Rob ; Kugathasan, Subra ; McGovern, Dermot P B ; Petrosino, Joseph F ; Stappenbeck, Thaddeus S ; Winter, Harland S ; Clish, Clary B ; Franzosa, Eric A ; Vlamakis, Hera ; Xavier, Ramnik J ; Huttenhower, Curtis

Nature (London), 2019-05, Vol.569 (7758), p.655-662 [Periódico revisado por pares]

England: Nature Publishing Group

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4
Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations
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Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations

Casals-Pascual, Climent ; González, Antonio ; Vázquez-Baeza, Yoshiki ; Song, Se Jin ; Jiang, Lingjing ; Knight, Rob

Gastroenterology (New York, N.Y. 1943), 2020-05, Vol.158 (6), p.1524-1528 [Periódico revisado por pares]

United States: Elsevier Inc

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5
Challenges in benchmarking metagenomic profilers
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Artigo
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Challenges in benchmarking metagenomic profilers

Sun, Zheng ; Huang, Shi ; Zhang, Meng ; Zhu, Qiyun ; Haiminen, Niina ; Carrieri, Anna Paola ; Vázquez-Baeza, Yoshiki ; Parida, Laxmi ; Kim, Ho-Cheol ; Knight, Rob ; Liu, Yang-Yu

Nature methods, 2021-06, Vol.18 (6), p.618-626 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
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Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

Martino, Cameron ; Shenhav, Liat ; Marotz, Clarisse A ; Armstrong, George ; McDonald, Daniel ; Vázquez-Baeza, Yoshiki ; Morton, James T ; Jiang, Lingjing ; Dominguez-Bello, Maria Gloria ; Swafford, Austin D ; Halperin, Eran ; Knight, Rob

Nature biotechnology, 2021-02, Vol.39 (2), p.165-168 [Periódico revisado por pares]

United States: Nature Publishing Group

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7
Striped UniFrac: enabling microbiome analysis at unprecedented scale
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Striped UniFrac: enabling microbiome analysis at unprecedented scale

McDonald, Daniel ; Vázquez-Baeza, Yoshiki ; Koslicki, David ; McClelland, Jason ; Reeve, Nicolai ; Xu, Zhenjiang ; Gonzalez, Antonio ; Knight, Rob

Nature methods, 2018-11, Vol.15 (11), p.847-848 [Periódico revisado por pares]

United States: Nature Publishing Group

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8
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree
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Artigo
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Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Tripathi, Anupriya ; Vázquez-Baeza, Yoshiki ; Gauglitz, Julia M ; Wang, Mingxun ; Dührkop, Kai ; Nothias-Esposito, Mélissa ; Acharya, Deepa D ; Ernst, Madeleine ; van der Hooft, Justin J J ; Zhu, Qiyun ; McDonald, Daniel ; Brejnrod, Asker D ; Gonzalez, Antonio ; Handelsman, Jo ; Fleischauer, Markus ; Ludwig, Marcus ; Böcker, Sebastian ; Nothias, Louis-Félix ; Knight, Rob ; Dorrestein, Pieter C

Nature chemical biology, 2021-02, Vol.17 (2), p.146-151 [Periódico revisado por pares]

United States: Nature Publishing Group

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9
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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Artigo
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, Evan ; Rideout, Jai Ram ; Dillon, Matthew R ; Bokulich, Nicholas A ; Abnet, Christian C ; Al-Ghalith, Gabriel A ; Alexander, Harriet ; Alm, Eric J ; Arumugam, Manimozhiyan ; Asnicar, Francesco ; Bai, Yang ; Bittinger, Kyle ; Brejnrod, Asker ; Brislawn, Colin J ; Brown, C Titus ; Callahan, Benjamin J ; Caraballo-Rodríguez, Andrés Mauricio ; Chase, John ; Cope, Emily K ; Diener, Christian ; Dorrestein, Pieter C ; Douglas, Gavin M ; Durall, Daniel M ; Duvallet, Claire ; Edwardson, Christian F ; Estaki, Mehrbod ; Fouquier, Jennifer ; Gauglitz, Julia M ; Gibson, Deanna L ; Gonzalez, Antonio ; Gorlick, Kestrel ; Guo, Jiarong ; Holmes, Susan ; Holste, Hannes ; Huttenhower, Curtis ; Huttley, Gavin A ; Janssen, Stefan ; Jarmusch, Alan K ; Jiang, Lingjing ; Kaehler, Benjamin D ; Kang, Kyo Bin ; Keefe, Christopher R ; Keim, Paul ; Kelley, Scott T ; Knights, Dan ; Koester, Irina ; Kosciolek, Tomasz ; Kreps, Jorden ; Langille, Morgan G I ; Lee, Joslynn ; Ley, Ruth ; Liu, Yong-Xin ; Loftfield, Erikka ; Lozupone, Catherine ; Maher, Massoud ; Marotz, Clarisse ; Martin, Bryan D ; McDonald, Daniel ; Melnik, Alexey V ; Morgan, Sydney C ; Morton, Jamie T ; Naimey, Ahmad Turan ; Navas-Molina, Jose A ; Nothias, Louis Felix ; Orchanian, Stephanie B ; Pearson, Talima ; Peoples, Samuel L ; Petras, Daniel ; Preuss, Mary Lai ; Rasmussen, Lasse Buur ; Robeson, 2nd, Michael S ; Rosenthal, Patrick ; Segata, Nicola ; Shaffer, Michael ; Song, Se Jin ; Spear, John R ; Swafford, Austin D ; Thompson, Luke R ; Torres, Pedro J ; Trinh, Pauline ; Tripathi, Anupriya ; Turnbaugh, Peter J ; Ul-Hasan, Sabah ; van der Hooft, Justin J J ; Vargas, Fernando ; Vázquez-Baeza, Yoshiki ; Vogtmann, Emily ; von Hippel, Max ; Walters, William ; Wan, Yunhu ; Wang, Mingxun ; Weber, Kyle C ; Williamson, Charles H D ; Willis, Amy D ; Xu, Zhenjiang Zech ; Zaneveld, Jesse R ; Zhang, Yilong ; Zhu, Qiyun ; Knight, Rob ; Caporaso, J Gregory

Nature biotechnology, 2019-08, Vol.37 (8), p.852-857 [Periódico revisado por pares]

United States: Nature Publishing Group

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10
A communal catalogue reveals Earth's multiscale microbial diversity
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Artigo
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A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, Luke R ; Sanders, Jon G ; McDonald, Daniel ; Amir, Amnon ; Ladau, Joshua ; Locey, Kenneth J ; Prill, Robert J ; Tripathi, Anupriya ; Gibbons, Sean M ; Ackermann, Gail ; Navas-Molina, Jose A ; Janssen, Stefan ; Kopylova, Evguenia ; Vázquez-Baeza, Yoshiki ; González, Antonio ; Morton, James T ; Mirarab, Siavash ; Zech Xu, Zhenjiang ; Jiang, Lingjing ; Haroon, Mohamed F ; Kanbar, Jad ; Zhu, Qiyun ; Jin Song, Se ; Kosciolek, Tomasz ; Bokulich, Nicholas A ; Lefler, Joshua ; Brislawn, Colin J ; Humphrey, Gregory ; Owens, Sarah M ; Hampton-Marcell, Jarrad ; Berg-Lyons, Donna ; McKenzie, Valerie ; Fierer, Noah ; Fuhrman, Jed A ; Clauset, Aaron ; Stevens, Rick L ; Shade, Ashley ; Pollard, Katherine S ; Goodwin, Kelly D ; Jansson, Janet K ; Gilbert, Jack A ; Knight, Rob

Nature (London), 2017-11, Vol.551 (7681), p.457-463 [Periódico revisado por pares]

England: Nature Publishing Group

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