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Material Type: Artigo
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Author Correction: cfSNV: a software tool for the sensitive detection of somatic mutations from cell-free DNALi, Shuo ; Hu, Ran ; Small, Colin ; Kang, Ting-Yu ; Liu, Chun-Chi ; Zhou, Xianghong Jasmine ; Li, WenyuanNature protocols, 2024-04, Vol.19 (4), p.1289-1289 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysisBouckaert, Remco ; Vaughan, Timothy G ; Barido-Sottani, Joëlle ; Duchêne, Sebastián ; Fourment, Mathieu ; Gavryushkina, Alexandra ; Heled, Joseph ; Jones, Graham ; Kühnert, Denise ; De Maio, Nicola ; Matschiner, Michael ; Mendes, Fábio K ; Müller, Nicola F ; Ogilvie, Huw A ; du Plessis, Louis ; Popinga, Alex ; Rambaut, Andrew ; Rasmussen, David ; Siveroni, Igor ; Suchard, Marc A ; Wu, Chieh-Hsi ; Xie, Dong ; Zhang, Chi ; Stadler, Tanja ; Drummond, Alexei J Pertea, MihaelaPLoS computational biology, 2019-04, Vol.15 (4), p.e1006650-e1006650 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\text{COSNet}}_i$$\end{document}COSNeti: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomesMartinez-Seidel, Federico ; Hsieh, Yin-Chen ; Walther, Dirk ; Kopka, Joachim ; Pereira Firmino, Alexandre AugustoBMC bioinformatics, 2021-12, Vol.22 [Periódico revisado por pares]London: BioMed CentralTexto completo disponível |
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Material Type: Artigo
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Qiita: rapid, web-enabled microbiome meta-analysisGonzalez, Antonio ; Navas-Molina, Jose A ; Kosciolek, Tomasz ; McDonald, Daniel ; Vázquez-Baeza, Yoshiki ; Ackermann, Gail ; DeReus, Jeff ; Janssen, Stefan ; Swafford, Austin D ; Orchanian, Stephanie B ; Sanders, Jon G ; Shorenstein, Joshua ; Holste, Hannes ; Petrus, Semar ; Robbins-Pianka, Adam ; Brislawn, Colin J ; Wang, Mingxun ; Rideout, Jai Ram ; Bolyen, Evan ; Dillon, Matthew ; Caporaso, J Gregory ; Dorrestein, Pieter C ; Knight, RobNature methods, 2018-10, Vol.15 (10), p.796-798 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Better together: Elements of successful scientific software development in a distributed collaborative communityKoehler Leman, Julia ; Weitzner, Brian D ; Renfrew, P Douglas ; Lewis, Steven M ; Moretti, Rocco ; Watkins, Andrew M ; Mulligan, Vikram Khipple ; Lyskov, Sergey ; Adolf-Bryfogle, Jared ; Labonte, Jason W ; Krys, Justyna ; Bystroff, Christopher ; Schief, William ; Gront, Dominik ; Schueler-Furman, Ora ; Baker, David ; Bradley, Philip ; Dunbrack, Roland ; Kortemme, Tanja ; Leaver-Fay, Andrew ; Strauss, Charlie E M ; Meiler, Jens ; Kuhlman, Brian ; Gray, Jeffrey J ; Bonneau, Richard Schneidman-Duhovny, DinaPLoS computational biology, 2020-05, Vol.16 (5), p.e1007507-e1007507 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0Heirendt, Laurent ; Arreckx, Sylvain ; Pfau, Thomas ; Mendoza, Sebastián N ; Richelle, Anne ; Heinken, Almut ; Haraldsdóttir, Hulda S ; Wachowiak, Jacek ; Keating, Sarah M ; Vlasov, Vanja ; Magnusdóttir, Stefania ; Ng, Chiam Yu ; Preciat, German ; Žagare, Alise ; Chan, Siu H J ; Aurich, Maike K ; Clancy, Catherine M ; Modamio, Jennifer ; Sauls, John T ; Noronha, Alberto ; Bordbar, Aarash ; Cousins, Benjamin ; El Assal, Diana C ; Valcarcel, Luis V ; Apaolaza, Iñigo ; Ghaderi, Susan ; Ahookhosh, Masoud ; Ben Guebila, Marouen ; Kostromins, Andrejs ; Sompairac, Nicolas ; Le, Hoai M ; Ma, Ding ; Sun, Yuekai ; Wang, Lin ; Yurkovich, James T ; Oliveira, Miguel A P ; Vuong, Phan T ; El Assal, Lemmer P ; Kuperstein, Inna ; Zinovyev, Andrei ; Hinton, H Scott ; Bryant, William A ; Aragón Artacho, Francisco J ; Planes, Francisco J ; Stalidzans, Egils ; Maass, Alejandro ; Vempala, Santosh ; Hucka, Michael ; Saunders, Michael A ; Maranas, Costas D ; Lewis, Nathan E ; Sauter, Thomas ; Palsson, Bernhard Ø ; Thiele, Ines ; Fleming, Ronan M TNature protocols, 2019-03, Vol.14 (3), p.639-702 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Correction: Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics DataPloS one, 2014-04, Vol.9 (4), p.e93351 [Periódico revisado por pares]San Francisco: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification LanguageHöhna, Sebastian ; Landis, Michael J. ; Heath, Tracy A. ; Boussau, Bastien ; Lartillot, Nicolas ; Moore, Brian R. ; Huelsenbeck, John P. ; Ronquist, FredrikSystematic biology, 2016-07, Vol.65 (4), p.726-736 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivarGarrison, Erik ; Kronenberg, Zev N ; Dawson, Eric T ; Pedersen, Brent S ; Prins, Pjotr Schneidman-Duhovny, DinaPLoS computational biology, 2022-05, Vol.18 (5), p.e1009123-e1009123 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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mMass as a software tool for the annotation of cyclic peptide tandem mass spectraNiedermeyer, Timo H J ; Strohalm, Martin Koomen, John MatthewPloS one, 2012-09, Vol.7 (9), p.e44913-e44913 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |