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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Overbeek, Ross ; Olson, Robert ; Pusch, Gordon D ; Olsen, Gary J ; Davis, James J ; Disz, Terry ; Edwards, Robert A ; Gerdes, Svetlana ; Parrello, Bruce ; Shukla, Maulik ; Vonstein, Veronika ; Wattam, Alice R ; Xia, Fangfang ; Stevens, Rick

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D206-D214 [Periódico revisado por pares]

England: Oxford University Press

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RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
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RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Brettin, Thomas ; Davis, James J ; Disz, Terry ; Edwards, Robert A ; Gerdes, Svetlana ; Olsen, Gary J ; Olson, Robert ; Overbeek, Ross ; Parrello, Bruce ; Pusch, Gordon D ; Shukla, Maulik ; Thomason, 3rd, James A ; Stevens, Rick ; Vonstein, Veronika ; Wattam, Alice R ; Xia, Fangfang

Scientific reports, 2015-02, Vol.5 (1), p.8365-8365, Article 8365 [Periódico revisado por pares]

England: Nature Publishing Group

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3
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
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Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Olson, Robert D ; Assaf, Rida ; Brettin, Thomas ; Conrad, Neal ; Cucinell, Clark ; Davis, James J ; Dempsey, Donald M ; Dickerman, Allan ; Dietrich, Emily M ; Kenyon, Ronald W ; Kuscuoglu, Mehmet ; Lefkowitz, Elliot J ; Lu, Jian ; Machi, Dustin ; Macken, Catherine ; Mao, Chunhong ; Niewiadomska, Anna ; Nguyen, Marcus ; Olsen, Gary J ; Overbeek, Jamie C ; Parrello, Bruce ; Parrello, Victoria ; Porter, Jacob S ; Pusch, Gordon D ; Shukla, Maulik ; Singh, Indresh ; Stewart, Lucy ; Tan, Gene ; Thomas, Chris ; VanOeffelen, Margo ; Vonstein, Veronika ; Wallace, Zachary S ; Warren, Andrew S ; Wattam, Alice R ; Xia, Fangfang ; Yoo, Hyunseung ; Zhang, Yun ; Zmasek, Christian M ; Scheuermann, Richard H ; Stevens, Rick L

Nucleic acids research, 2023-01, Vol.51 (D1), p.D678-D689 [Periódico revisado por pares]

England: Oxford University Press

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4
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Wattam, Alice R ; Davis, James J ; Assaf, Rida ; Boisvert, Sébastien ; Brettin, Thomas ; Bun, Christopher ; Conrad, Neal ; Dietrich, Emily M ; Disz, Terry ; Gabbard, Joseph L ; Gerdes, Svetlana ; Henry, Christopher S ; Kenyon, Ronald W ; Machi, Dustin ; Mao, Chunhong ; Nordberg, Eric K ; Olsen, Gary J ; Murphy-Olson, Daniel E ; Olson, Robert ; Overbeek, Ross ; Parrello, Bruce ; Pusch, Gordon D ; Shukla, Maulik ; Vonstein, Veronika ; Warren, Andrew ; Xia, Fangfang ; Yoo, Hyunseung ; Stevens, Rick L

Nucleic acids research, 2017-01, Vol.45 (D1), p.D535-D542 [Periódico revisado por pares]

England: Oxford University Press

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5
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
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SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

Aziz, Ramy K ; Devoid, Scott ; Disz, Terrence ; Edwards, Robert A ; Henry, Christopher S ; Olsen, Gary J ; Olson, Robert ; Overbeek, Ross ; Parrello, Bruce ; Pusch, Gordon D ; Stevens, Rick L ; Vonstein, Veronika ; Xia, Fangfang Ahmed, Niyaz

PloS 1, 2012-10, Vol.7 (10), p.e48053-e48053 [Periódico revisado por pares]

United States: Public Library of Science

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6
PATRIC, the bacterial bioinformatics database and analysis resource
PATRIC, the bacterial bioinformatics database and analysis resource
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PATRIC, the bacterial bioinformatics database and analysis resource

Wattam, Alice R ; Abraham, David ; Dalay, Oral ; Disz, Terry L ; Driscoll, Timothy ; Gabbard, Joseph L ; Gillespie, Joseph J ; Gough, Roger ; Hix, Deborah ; Kenyon, Ronald ; Machi, Dustin ; Mao, Chunhong ; Nordberg, Eric K ; Olson, Robert ; Overbeek, Ross ; Pusch, Gordon D ; Shukla, Maulik ; Schulman, Julie ; Stevens, Rick L ; Sullivan, Daniel E ; Vonstein, Veronika ; Warren, Andrew ; Will, Rebecca ; Wilson, Meredith J C ; Yoo, Hyun Seung ; Zhang, Chengdong ; Zhang, Yan ; Sobral, Bruno W

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D581-D591 [Periódico revisado por pares]

England: Oxford University Press

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7
Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC
Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC
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Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

Parrello, Bruce ; Butler, Rory ; Chlenski, Philippe ; Pusch, Gordon D ; Overbeek, Ross Kalendar, Ruslan

PloS one, 2021-04, Vol.16 (4), p.e0250092-e0250092 [Periódico revisado por pares]

United States: Public Library of Science

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8
The RAST Server: rapid annotations using subsystems technology
The RAST Server: rapid annotations using subsystems technology
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The RAST Server: rapid annotations using subsystems technology

Aziz, Ramy K ; Bartels, Daniela ; Best, Aaron A ; DeJongh, Matthew ; Disz, Terrence ; Edwards, Robert A ; Formsma, Kevin ; Gerdes, Svetlana ; Glass, Elizabeth M ; Kubal, Michael ; Meyer, Folker ; Olsen, Gary J ; Olson, Robert ; Osterman, Andrei L ; Overbeek, Ross A ; McNeil, Leslie K ; Paarmann, Daniel ; Paczian, Tobias ; Parrello, Bruce ; Pusch, Gordon D ; Reich, Claudia ; Stevens, Rick ; Vassieva, Olga ; Vonstein, Veronika ; Wilke, Andreas ; Zagnitko, Olga

BMC Genomics, 2008-02, Vol.9 (1), p.75-75, Article 75 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
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PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

Davis, James J ; Gerdes, Svetlana ; Olsen, Gary J ; Olson, Robert ; Pusch, Gordon D ; Shukla, Maulik ; Vonstein, Veronika ; Wattam, Alice R ; Yoo, Hyunseung

Frontiers in microbiology, 2016-02, Vol.7, p.118-118 [Periódico revisado por pares]

Switzerland: Frontiers Research Foundation

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10
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center
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Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center

Wattam, Alice R. ; Brettin, Thomas ; Davis, James J. ; Gerdes, Svetlana ; Kenyon, Ronald ; Machi, Dustin ; Mao, Chunhong ; Olson, Robert ; Overbeek, Ross ; Pusch, Gordon D. ; Shukla, Maulik P. ; Stevens, Rick ; Vonstein, Veronika ; Warren, Andrew ; Xia, Fangfang ; Yoo, Hyunseung

Comparative Genomics, 2018-01, Vol.1704, p.79-101

New York, NY: Springer New York

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