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1
DELLY: structural variant discovery by integrated paired-end and split-read analysis
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DELLY: structural variant discovery by integrated paired-end and split-read analysis

Rausch, Tobias ; Zichner, Thomas ; Schlattl, Andreas ; Stütz, Adrian M ; Benes, Vladimir ; Korbel, Jan O

Bioinformatics, 2012-09, Vol.28 (18), p.i333-i339 [Periódico revisado por pares]

England: Oxford University Press

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2
Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
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Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking

Weischenfeldt, Joachim ; Dubash, Taronish ; Drainas, Alexandros P ; Mardin, Balca R ; Chen, Yuanyuan ; Stütz, Adrian M ; Waszak, Sebastian M ; Bosco, Graziella ; Halvorsen, Ann Rita ; Raeder, Benjamin ; Efthymiopoulos, Theocharis ; Erkek, Serap ; Siegl, Christine ; Brenner, Hermann ; Brustugun, Odd Terje ; Dieter, Sebastian M ; Northcott, Paul A ; Petersen, Iver ; Pfister, Stefan M ; Schneider, Martin ; Solberg, Steinar K ; Thunissen, Erik ; Weichert, Wilko ; Zichner, Thomas ; Thomas, Roman ; Peifer, Martin ; Helland, Aslaug ; Ball, Claudia R ; Jechlinger, Martin ; Sotillo, Rocio ; Glimm, Hanno ; Korbel, Jan O

Nature genetics, 2017-01, Vol.49 (1), p.65-74 [Periódico revisado por pares]

United States: Nature Publishing Group

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3
Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations
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Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations

Rausch, Tobias ; Jones, David T.W. ; Zapatka, Marc ; Stütz, Adrian M. ; Zichner, Thomas ; Weischenfeldt, Joachim ; Jäger, Natalie ; Remke, Marc ; Shih, David ; Northcott, Paul A. ; Pfaff, Elke ; Tica, Jelena ; Wang, Qi ; Massimi, Luca ; Witt, Hendrik ; Bender, Sebastian ; Pleier, Sabrina ; Cin, Huriye ; Hawkins, Cynthia ; Beck, Christian ; von Deimling, Andreas ; Hans, Volkmar ; Brors, Benedikt ; Eils, Roland ; Scheurlen, Wolfram ; Blake, Jonathon ; Benes, Vladimir ; Kulozik, Andreas E. ; Witt, Olaf ; Martin, Dianna ; Zhang, Cindy ; Porat, Rinnat ; Merino, Diana M. ; Wasserman, Jonathan ; Jabado, Nada ; Fontebasso, Adam ; Bullinger, Lars ; Rücker, Frank G. ; Döhner, Konstanze ; Döhner, Hartmut ; Koster, Jan ; Molenaar, Jan J. ; Versteeg, Rogier ; Kool, Marcel ; Tabori, Uri ; Malkin, David ; Korshunov, Andrey ; Taylor, Michael D. ; Lichter, Peter ; Pfister, Stefan M. ; Korbel, Jan O.

Cell, 2012-01, Vol.148 (1-2), p.59-71 [Periódico revisado por pares]

United States: Elsevier Inc

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4
Assembly and diploid architecture of an individual human genome via single-molecule technologies
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Artigo
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Assembly and diploid architecture of an individual human genome via single-molecule technologies

Pendleton, Matthew ; Sebra, Robert ; Pang, Andy Wing Chun ; Ummat, Ajay ; Franzen, Oscar ; Rausch, Tobias ; Stütz, Adrian M ; Stedman, William ; Anantharaman, Thomas ; Hastie, Alex ; Dai, Heng ; Fritz, Markus Hsi-Yang ; Cao, Han ; Cohain, Ariella ; Deikus, Gintaras ; Durrett, Russell E ; Blanchard, Scott C ; Altman, Roger ; Chin, Chen-Shan ; Guo, Yan ; Paxinos, Ellen E ; Korbel, Jan O ; Darnell, Robert B ; McCombie, W Richard ; Kwok, Pui-Yan ; Mason, Christopher E ; Schadt, Eric E ; Bashir, Ali

Nature methods, 2015-08, Vol.12 (8), p.780-786 [Periódico revisado por pares]

United States: Nature Publishing Group

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5
Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer
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Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer

Weischenfeldt, Joachim ; Simon, Ronald ; Feuerbach, Lars ; Schlangen, Karin ; Weichenhan, Dieter ; Minner, Sarah ; Wuttig, Daniela ; Warnatz, Hans-Jörg ; Stehr, Henning ; Rausch, Tobias ; Jäger, Natalie ; Gu, Lei ; Bogatyrova, Olga ; Stütz, Adrian M. ; Claus, Rainer ; Eils, Jürgen ; Eils, Roland ; Gerhäuser, Clarissa ; Huang, Po-Hsien ; Hutter, Barbara ; Kabbe, Rolf ; Lawerenz, Christian ; Radomski, Sylwester ; Bartholomae, Cynthia C. ; Fälth, Maria ; Gade, Stephan ; Schmidt, Manfred ; Amschler, Nina ; Haß, Thomas ; Galal, Rami ; Gjoni, Jovisa ; Kuner, Ruprecht ; Baer, Constance ; Masser, Sawinee ; von Kalle, Christof ; Zichner, Thomas ; Benes, Vladimir ; Raeder, Benjamin ; Mader, Malte ; Amstislavskiy, Vyacheslav ; Avci, Meryem ; Lehrach, Hans ; Parkhomchuk, Dmitri ; Sultan, Marc ; Burkhardt, Lia ; Graefen, Markus ; Huland, Hartwig ; Kluth, Martina ; Krohn, Antje ; Sirma, Hüseyin ; Stumm, Laura ; Steurer, Stefan ; Grupp, Katharina ; Sültmann, Holger ; Sauter, Guido ; Plass, Christoph ; Brors, Benedikt ; Yaspo, Marie-Laure ; Korbel, Jan O. ; Schlomm, Thorsten

Cancer cell, 2013-02, Vol.23 (2), p.159-170 [Periódico revisado por pares]

United States: Elsevier Inc

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6
A comprehensive map of mobile element insertion polymorphisms in humans
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A comprehensive map of mobile element insertion polymorphisms in humans

Stewart, Chip ; Kural, Deniz ; Strömberg, Michael P ; Walker, Jerilyn A ; Konkel, Miriam K ; Stütz, Adrian M ; Urban, Alexander E ; Grubert, Fabian ; Lam, Hugo Y K ; Lee, Wan-Ping ; Busby, Michele ; Indap, Amit R ; Garrison, Erik ; Huff, Chad ; Xing, Jinchuan ; Snyder, Michael P ; Jorde, Lynn B ; Batzer, Mark A ; Korbel, Jan O ; Marth, Gabor T Malik, Harmit S.

PLoS genetics, 2011-08, Vol.7 (8), p.e1002236 [Periódico revisado por pares]

United States: Public Library of Science

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7
A scalable CRISPR/Cas9-based fluorescent reporter assay to study DNA double-strand break repair choice
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A scalable CRISPR/Cas9-based fluorescent reporter assay to study DNA double-strand break repair choice

Roidos, Paris ; Sungalee, Stephanie ; Benfatto, Salvatore ; Serçin, Özdemirhan ; Stütz, Adrian M. ; Abdollahi, Amir ; Mauer, Jan ; Zenke, Frank T. ; Korbel, Jan O. ; Mardin, Balca R.

Nature communications, 2020-08, Vol.11 (1), p.1-15, Article 4077 [Periódico revisado por pares]

London: Nature Publishing Group

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8
A cell‐based model system links chromothripsis with hyperploidy
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A cell‐based model system links chromothripsis with hyperploidy

Mardin, Balca R ; Drainas, Alexandros P ; Waszak, Sebastian M ; Weischenfeldt, Joachim ; Isokane, Mayumi ; Stütz, Adrian M ; Raeder, Benjamin ; Efthymiopoulos, Theocharis ; Buccitelli, Christopher ; Segura‐Wang, Maia ; Northcott, Paul ; Pfister, Stefan M ; Lichter, Peter ; Ellenberg, Jan ; Korbel, Jan O

Molecular systems biology, 2015-09, Vol.11 (9), p.828-n/a [Periódico revisado por pares]

England: John Wiley & Sons, Inc

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9
The genomic and transcriptomic landscape of a HeLa cell line
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The genomic and transcriptomic landscape of a HeLa cell line

Landry, Jonathan J M ; Pyl, Paul Theodor ; Rausch, Tobias ; Zichner, Thomas ; Tekkedil, Manu M ; Stütz, Adrian M ; Jauch, Anna ; Aiyar, Raeka S ; Pau, Gregoire ; Delhomme, Nicolas ; Gagneur, Julien ; Korbel, Jan O ; Huber, Wolfgang ; Steinmetz, Lars M

G3 : genes - genomes - genetics, 2013-08, Vol.3 (8), p.1213-1224 [Periódico revisado por pares]

United States: Genetics Society of America

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10
Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads
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Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads

Moncunill, Valentí ; Gonzalez, Santi ; Beà, Sílvia ; Andrieux, Lise O ; Salaverria, Itziar ; Royo, Cristina ; Martinez, Laura ; Puiggròs, Montserrat ; Segura-Wang, Maia ; Stütz, Adrian M ; Navarro, Alba ; Royo, Romina ; Gelpí, Josep L ; Gut, Ivo G ; López-Otín, Carlos ; Orozco, Modesto ; Korbel, Jan O ; Campo, Elias ; Puente, Xose S ; Torrents, David

Nature biotechnology, 2014-11, Vol.32 (11), p.1106-1112 [Periódico revisado por pares]

United States: Nature Publishing Group

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