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1
The landscape of long noncoding RNAs in the human transcriptome
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Artigo
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The landscape of long noncoding RNAs in the human transcriptome

Iyer, Matthew K ; Niknafs, Yashar S ; Malik, Rohit ; Singhal, Udit ; Sahu, Anirban ; Hosono, Yasuyuki ; Barrette, Terrence R ; Prensner, John R ; Evans, Joseph R ; Zhao, Shuang ; Poliakov, Anton ; Cao, Xuhong ; Dhanasekaran, Saravana M ; Wu, Yi-Mi ; Robinson, Dan R ; Beer, David G ; Feng, Felix Y ; Iyer, Hariharan K ; Chinnaiyan, Arul M

Nature genetics, 2015-03, Vol.47 (3), p.199-208 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1 , an unannotated lincRNA implicated in disease progression
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Artigo
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Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1 , an unannotated lincRNA implicated in disease progression

Chinnaiyan, Arul M ; Prensner, John R ; Iyer, Matthew K ; Balbin, O Alejandro ; Dhanasekaran, Saravana M ; Cao, Qi ; Brenner, J Chad ; Laxman, Bharathi ; Asangani, Irfan A ; Grasso, Catherine S ; Kominsky, Hal D ; Cao, Xuhong ; Jing, Xiaojun ; Wang, Xiaoju ; Siddiqui, Javed ; Wei, John T ; Robinson, Daniel ; Iyer, Hari K ; Palanisamy, Nallasivam ; Maher, Christopher A

Nature biotechnology, 2011-08, Vol.29 (8), p.742-749 [Periódico revisado por pares]

New York, NY: Nature Publishing Group

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3
ChimeraScan: a tool for identifying chimeric transcription in sequencing data
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Artigo
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ChimeraScan: a tool for identifying chimeric transcription in sequencing data

Iyer, Matthew K ; Chinnaiyan, Arul M ; Maher, Christopher A

Bioinformatics, 2011-10, Vol.27 (20), p.2903-2904 [Periódico revisado por pares]

Oxford: Oxford University Press

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4
Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers
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Artigo
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Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers

Kalyana-Sundaram, Shanker ; Kumar-Sinha, Chandan ; Shankar, Sunita ; Robinson, Dan R. ; Wu, Yi-Mi ; Cao, Xuhong ; Asangani, Irfan A. ; Kothari, Vishal ; Prensner, John R. ; Lonigro, Robert J. ; Iyer, Matthew K. ; Barrette, Terrence ; Shanmugam, Achiraman ; Dhanasekaran, Saravana M. ; Palanisamy, Nallasivam ; Chinnaiyan, Arul M.

Cell, 2012-06, Vol.149 (7), p.1622-1634 [Periódico revisado por pares]

United States: Elsevier Inc

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5
Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA
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Artigo
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Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA

Hosono, Yasuyuki ; Niknafs, Yashar S. ; Prensner, John R. ; Iyer, Matthew K. ; Dhanasekaran, Saravana M. ; Mehra, Rohit ; Pitchiaya, Sethuramasundaram ; Tien, Jean ; Escara-Wilke, June ; Poliakov, Anton ; Chu, Shih-Chun ; Saleh, Sahal ; Sankar, Keerthana ; Su, Fengyun ; Guo, Shuling ; Qiao, Yuanyuan ; Freier, Susan M. ; Bui, Huynh-Hoa ; Cao, Xuhong ; Malik, Rohit ; Johnson, Timothy M. ; Beer, David G. ; Feng, Felix Y. ; Zhou, Weibin ; Chinnaiyan, Arul M.

Cell, 2017-12, Vol.171 (7), p.1559-1572.e20 [Periódico revisado por pares]

United States: Elsevier Inc

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6
Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing
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Artigo
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Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing

Robinson, Dan R ; Wu, Yi-Mi ; Kalyana-Sundaram, Shanker ; Cao, Xuhong ; Lonigro, Robert J ; Sung, Yun-Shao ; Chen, Chun-Liang ; Zhang, Lei ; Wang, Rui ; Su, Fengyun ; Iyer, Matthew K ; Roychowdhury, Sameek ; Siddiqui, Javed ; Pienta, Kenneth J ; Kunju, Lakshmi P ; Talpaz, Moshe ; Mosquera, Juan Miguel ; Singer, Samuel ; Schuetze, Scott M ; Antonescu, Cristina R ; Chinnaiyan, Arul M

Nature genetics, 2013-02, Vol.45 (2), p.180-185 [Periódico revisado por pares]

United States: Nature Publishing Group

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7
Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression
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Artigo
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Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression

Zhang, Yajia ; Pitchiaya, Sethuramasundaram ; Cieślik, Marcin ; Niknafs, Yashar S ; Tien, Jean C-Y ; Hosono, Yasuyuki ; Iyer, Matthew K ; Yazdani, Sahr ; Subramaniam, Shruthi ; Shukla, Sudhanshu K ; Jiang, Xia ; Wang, Lisha ; Liu, Tzu-Ying ; Uhl, Michael ; Gawronski, Alexander R ; Qiao, Yuanyuan ; Xiao, Lanbo ; Dhanasekaran, Saravana M ; Juckette, Kristin M ; Kunju, Lakshmi P ; Cao, Xuhong ; Patel, Utsav ; Batish, Mona ; Shukla, Girish C ; Paulsen, Michelle T ; Ljungman, Mats ; Jiang, Hui ; Mehra, Rohit ; Backofen, Rolf ; Sahinalp, Cenk S ; Freier, Susan M ; Watt, Andrew T ; Guo, Shuling ; Wei, John T ; Feng, Felix Y ; Malik, Rohit ; Chinnaiyan, Arul M

Nature genetics, 2018-06, Vol.50 (6), p.814-824 [Periódico revisado por pares]

United States: Nature Publishing Group

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8
Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin
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Artigo
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Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin

Tsoi, Lam C ; Iyer, Matthew K ; Stuart, Philip E ; Swindell, William R ; Gudjonsson, Johann E ; Tejasvi, Trilokraj ; Sarkar, Mrinal K ; Li, Bingshan ; Ding, Jun ; Voorhees, John J ; Kang, Hyun M ; Nair, Rajan P ; Chinnaiyan, Arul M ; Abecasis, Goncalo R ; Elder, James T

Genome Biology, 2015-01, Vol.16 (1), p.24-24, Article 24 [Periódico revisado por pares]

England: BioMed Central Ltd

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9
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
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Artigo
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The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex

Prensner, John R ; Iyer, Matthew K ; Sahu, Anirban ; Asangani, Irfan A ; Cao, Qi ; Patel, Lalit ; Vergara, Ismael A ; Davicioni, Elai ; Erho, Nicholas ; Ghadessi, Mercedeh ; Jenkins, Robert B ; Triche, Timothy J ; Malik, Rohit ; Bedenis, Rachel ; McGregor, Natalie ; Ma, Teng ; Chen, Wei ; Han, Sumin ; Jing, Xiaojun ; Cao, Xuhong ; Wang, Xiaoju ; Chandler, Benjamin ; Yan, Wei ; Siddiqui, Javed ; Kunju, Lakshmi P ; Dhanasekaran, Saravana M ; Pienta, Kenneth J ; Feng, Felix Y ; Chinnaiyan, Arul M

Nature genetics, 2013-11, Vol.45 (11), p.1392-1398 [Periódico revisado por pares]

United States: Nature Publishing Group

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10
RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1
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RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1

Prensner, John R, MD ; Zhao, Shuang, MSc ; Erho, Nicholas, MSc ; Schipper, Matthew, PhD ; Iyer, Matthew K, PhD ; Dhanasekaran, Saravana M, PhD ; Magi-Galluzzi, Cristina, MD ; Mehra, Rohit, MD ; Sahu, Anirban, BSc ; Siddiqui, Javed, MSc ; Davicioni, Elai, PhD ; Den, Robert B, MD ; Dicker, Adam P, Prof ; Karnes, R Jeffrey, MD ; Wei, John T, Prof ; Klein, Eric A, Prof ; Jenkins, Robert B, Prof ; Chinnaiyan, Arul M, Prof ; Feng, Felix Y, Dr

The lancet oncology, 2014-12, Vol.15 (13), p.1469-1480 [Periódico revisado por pares]

England: Elsevier Ltd

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