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JAGuaR: junction alignments to genome for RNA-seq reads
JAGuaR: junction alignments to genome for RNA-seq reads
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JAGuaR: junction alignments to genome for RNA-seq reads

Butterfield, Yaron S ; Kreitzman, Maayan ; Thiessen, Nina ; Corbett, Richard D ; Li, Yisu ; Pang, Johnson ; Ma, Yussanne P ; Jones, Steven J M ; Birol, İnanç Desvaux, Mickaël

PloS one, 2014-07, Vol.9 (7), p.e102398-e102398 [Periódico revisado por pares]

United States: Public Library of Science

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2
A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing
A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing
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A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing

Xu, Jing ; Pandoh, Pawan K ; Corbett, Richard D ; Smailus, Duane ; Bowlby, Reanne ; Brooks, Denise ; McDonald, Helen ; Haile, Simon ; Chahal, Sundeep ; Bilobram, Steve ; Mungall, Karen L ; Mungall, Andrew J ; Coope, Robin ; Moore, Richard A ; Zhao, Yongjun ; Jones, Steven Jm ; Marra, Marco A

BioTechniques, 2023-08, Vol.75 (2), p.47-55 [Periódico revisado por pares]

England: Future Science Ltd

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3
Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA
Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA
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Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

Haile, Simon ; Corbett, Richard D ; Bilobram, Steve ; Mungall, Karen ; Grande, Bruno M ; Kirk, Heather ; Pandoh, Pawan ; MacLeod, Tina ; McDonald, Helen ; Bala, Miruna ; Coope, Robin J ; Moore, Richard A ; Mungall, Andrew J ; Zhao, Yongjun ; Morin, Ryan D ; Jones, Steven J ; Marra, Marco A Preiss, Thomas

PloS one, 2019-10, Vol.14 (10), p.e0224578 [Periódico revisado por pares]

United States: Public Library of Science

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4
Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data
Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data
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Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data

Dodani, Dollina D ; Nguyen, Matthew H ; Morin, Ryan D ; Marra, Marco A ; Corbett, Richard D

Frontiers in genetics, 2022-04, Vol.13, p.834764-834764 [Periódico revisado por pares]

Switzerland: Frontiers Media S.A

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5
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis
Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis
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Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

Haile, Simon ; Pandoh, Pawan ; McDonald, Helen ; Corbett, Richard D ; Tsao, Philip ; Kirk, Heather ; MacLeod, Tina ; Jones, Martin ; Bilobram, Steve ; Brooks, Denise ; Smailus, Duane ; Steidl, Christian ; Scott, David W ; Bala, Miruna ; Hirst, Martin ; Miller, Diane ; Moore, Richard A ; Mungall, Andrew J ; Coope, Robin J ; Ma, Yussanne ; Zhao, Yongjun ; Holt, Rob A ; Jones, Steven J ; Marra, Marco A Bradl, Monika

PloS one, 2017-06, Vol.12 (6), p.e0178706 [Periódico revisado por pares]

United States: Public Library of Science

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6
Complete genomic landscape of a recurring sporadic parathyroid carcinoma
Complete genomic landscape of a recurring sporadic parathyroid carcinoma
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Complete genomic landscape of a recurring sporadic parathyroid carcinoma

Kasaian, Katayoon ; Wiseman, Sam M ; Thiessen, Nina ; Mungall, Karen L ; Corbett, Richard D ; Qian, Jenny Q ; Nip, Ka Ming ; He, Ann ; Tse, Kane ; Chuah, Eric ; Varhol, Richard J ; Pandoh, Pawan ; McDonald, Helen ; Zeng, Thomas ; Tam, Angela ; Schein, Jacquie ; Birol, Inanc ; Mungall, Andrew J ; Moore, Richard A ; Zhao, Yongjun ; Hirst, Martin ; Marra, Marco A ; Walker, Blair A ; Jones, Steven JM

The Journal of pathology, 2013-07, Vol.230 (3), p.249-260 [Periódico revisado por pares]

Chichester, UK: John Wiley & Sons, Ltd

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7
A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood
A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood
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A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood

Pandoh, Pawan K ; Corbett, Richard D ; McDonald, Helen ; Alcaide, Miguel ; Kirk, Heather ; Trinh, Eva ; Haile, Simon ; MacLeod, Tina ; Smailus, Duane ; Bilobram, Steve ; Mungall, Andrew J ; Ma, Yussanne ; Moore, Richard A ; Coope, Robin ; Zhao, Yongjun ; Jones, Steven JM ; Holt, Robert A ; Karsan, Aly ; Morin, Ryan D ; Marra, Marco A

BioTechniques, 2019-02, Vol.66 (2), p.85-92 [Periódico revisado por pares]

England: Future Science Ltd

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8
TMBur: a distributable tumor mutation burden approach for whole genome sequencing
TMBur: a distributable tumor mutation burden approach for whole genome sequencing
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TMBur: a distributable tumor mutation burden approach for whole genome sequencing

Titmuss, Emma ; Corbett, Richard D ; Davidson, Scott ; Abbasi, Sanna ; Williamson, Laura M ; Pleasance, Erin D ; Shlien, Adam ; Renouf, Daniel J ; Jones, Steven J. M ; Laskin, Janessa ; Marra, Marco A

BMC medical genomics, 2022-09, Vol.15 (1), p.1-190, Article 190 [Periódico revisado por pares]

London: BioMed Central Ltd

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9
Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity
Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity
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Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity

Takemon, Yuka ; LeBlanc, Véronique G ; Song, Jungeun ; Chan, Susanna Y ; Lee, Stephen Dongsoo ; Trinh, Diane L ; Ahmad, Shiekh Tanveer ; Brothers, William R ; Corbett, Richard D ; Gagliardi, Alessia ; Moradian, Annie ; Cairncross, J Gregory ; Yip, Stephen ; Aparicio, Samuel A J R ; Chan, Jennifer A ; Hughes, Christopher S ; Morin, Gregg B ; Gorski, Sharon M ; Chittaranjan, Suganthi ; Marra, Marco A

Cancers, 2023-05, Vol.15 (10), p.2805 [Periódico revisado por pares]

Switzerland: MDPI AG

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10
A Distributed Whole Genome Sequencing Benchmark Study
A Distributed Whole Genome Sequencing Benchmark Study
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A Distributed Whole Genome Sequencing Benchmark Study

Corbett, Richard D ; Eveleigh, Robert ; Whitney, Joe ; Barai, Namrata ; Bourgey, Mathieu ; Chuah, Eric ; Johnson, Joanne ; Moore, Richard A ; Moradin, Neda ; Mungall, Karen L ; Pereira, Sergio ; Reuter, Miriam S ; Thiruvahindrapuram, Bhooma ; Wintle, Richard F ; Ragoussis, Jiannis ; Strug, Lisa J ; Herbrick, Jo-Anne ; Aziz, Naveed ; Jones, Steven J M ; Lathrop, Mark ; Scherer, Stephen W ; Staffa, Alfredo ; Mungall, Andrew J

Frontiers in genetics, 2020-12, Vol.11, p.612515-612515 [Periódico revisado por pares]

Switzerland: Frontiers Media S.A

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