Influence of Feature Encoding and Choice of Classifier on Disease Risk Prediction in Genome-Wide Association Studies

Mittag, Florian ; Römer, Michael ; Zell, Andreas Raghava, Gajendra P. S.

United States: Public Library of Science

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Path2Models: large-scale generation of computational models from biochemical pathway maps

Büchel, Finja ; Rodriguez, Nicolas ; Swainston, Neil ; Wrzodek, Clemens ; Czauderna, Tobias ; Keller, Roland ; Mittag, Florian ; Schubert, Michael ; Glont, Mihai ; Golebiewski, Martin ; van Iersel, Martijn ; Keating, Sarah ; Rall, Matthias ; Wybrow, Michael ; Hermjakob, Henning ; Hucka, Michael ; Kell, Douglas B ; Müller, Wolfgang ; Mendes, Pedro ; Zell, Andreas ; Chaouiya, Claudine ; Saez-Rodriguez, Julio ; Schreiber, Falk ; Laibe, Camille ; Dräger, Andreas ; Le Novère, Nicolas

England: BioMed Central Ltd

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Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

Wrzodek, Clemens ; Büchel, Finja ; Hinselmann, Georg ; Eichner, Johannes ; Mittag, Florian ; Zell, Andreas Christensen, Brock C.

United States: Public Library of Science

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Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes

Büchel, Finja ; Mittag, Florian ; Wrzodek, Clemens ; Zell, Andreas ; Gasser, Thomas ; Sharma, Manu Chamaillard, Mathias

United States: Public Library of Science

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Qualitative translation of relations from BioPAX to SBML qual

BÜCHEL, Finja ; WRZODEK, Clemens ; MITTAG, Florian ; DRÄGER, Andreas ; EICHNER, Johannes ; RODRIGUEZ, Nicolas ; LE NOVERE, Nicolas ; ZELL, Andreas

Oxford: Oxford University Press

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SBML Level 3: an extensible format for the exchange and reuse of biological models

Keating, Sarah M ; Waltemath, Dagmar ; König, Matthias ; Zhang, Fengkai ; Chaouiya, Claudine ; Finney, Andrew ; Gillespie, Colin S ; Helikar, Tomáš ; Malik‐Sheriff, Rahuman S ; Moraru, Ion I ; Naldi, Aurélien ; Sahle, Sven ; Schaff, James C ; Smith, Lucian P ; Swat, Maciej J ; Thieffry, Denis ; Wilkinson, Darren J ; Blinov, Michael L ; Begley, Kimberly ; Faeder, James R ; Gómez, Harold F ; Hamm, Thomas M ; Inagaki, Yuichiro ; Liebermeister, Wolfram ; Lucio, Daniel ; Proctor, Carole J ; Raman, Karthik ; Rodriguez, Nicolas ; Shapiro, Bruce E ; Tanimura, Naoki ; Wagner, John ; Sauro, Herbert M ; Palsson, Bernhard ; Bolouri, Hamid ; Kitano, Hiroaki ; Funahashi, Akira ; Hermjakob, Henning ; Doyle, John C ; Hucka, Michael ; Adams, Richard R ; Allen, Nicholas A ; Angermann, Bastian R ; Antoniotti, Marco ; Courtot, Mélanie ; Cox, Chris D ; Dalle Pezze, Piero ; Demir, Emek ; Denney, William S ; Dharuri, Harish ; Dorier, Julien ; Drasdo, Dirk ; Ebrahim, Ali ; Eichner, Johannes ; Elf, Johan ; Flamm, Christoph ; Fleming, Ronan MT ; Fröhlich, Martina ; Gonçalves, Emanuel ; Golebiewski, Martin ; Grabski, Hovakim ; Heavner, Benjamin D ; Hyduke, Daniel R ; Jong, Hidde ; Juty, Nick ; Karp, Peter D ; Kiselev, Ilya ; Klipp, Edda ; Knüpfer, Christian ; Kolpakov, Fedor ; Laibe, Camille ; Lawless, Conor ; Li, Lu ; Machne, Rainer ; Mendes, Pedro ; Mittag, Florian ; Monteiro, Pedro T ; Natarajan, Kedar Nath ; Nguyen, Tramy ; Pfau, Thomas ; Phair, Robert D ; Radivoyevitch, Tomas ; Rohwer, Johann M ; Saez‐Rodriguez, Julio ; Scharm, Martin ; Schmidt, Henning ; Schreiber, Falk ; Schubert, Michael ; Schulte, Roman ; Sealfon, Stuart C ; Soliman, Sylvain ; Stefan, Melanie I ; Sullivan, Devin P ; Takahashi, Koichi ; Teusink, Bas ; Tolnay, David ; Vazirabad, Ibrahim ; Kamp, Axel ; Wittig, Ulrike ; Wrzodek, Clemens ; Zucker, Jeremy

England: John Wiley & Sons, Inc

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ProDGe: investigating protein-protein interactions at the domain level

Büchel, Finja ; Wrzodek, Clemens ; Mittag, Florian ; Dräger, Andreas ; Schröder, Adrian ; Zell, Andreas

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JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Rodriguez, Nicolas ; Thomas, Alex ; Watanabe, Leandro ; Vazirabad, Ibrahim Y ; Kofia, Victor ; Gómez, Harold F ; Mittag, Florian ; Matthes, Jakob ; Rudolph, Jan ; Wrzodek, Finja ; Netz, Eugen ; Diamantikos, Alexander ; Eichner, Johannes ; Keller, Roland ; Wrzodek, Clemens ; Fröhlich, Sebastian ; Lewis, Nathan E ; Myers, Chris J ; Le Novère, Nicolas ; Palsson, Bernhard Ø ; Hucka, Michael ; Dräger, Andreas

England: Oxford University Press

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Use of support vector machines for disease risk prediction in genome-wide association studies: Concerns and opportunities

Mittag, Florian ; Büchel, Finja ; Saad, Mohamad ; Jahn, Andreas ; Schulte, Claudia ; Bochdanovits, Zoltan ; Simón-Sánchez, Javier ; Nalls, Mike A. ; Keller, Margaux ; Hernandez, Dena G. ; Gibbs, J. Raphael ; Lesage, Suzanne ; Brice, Alexis ; Heutink, Peter ; Martinez, Maria ; Wood, Nicholas W ; Hardy, John ; Singleton, Andrew B. ; Zell, Andreas ; Gasser, Thomas ; Sharma, Manu

Hoboken: Wiley Subscription Services, Inc., A Wiley Company

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