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deepTools: a flexible platform for exploring deep-sequencing data
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deepTools: a flexible platform for exploring deep-sequencing data

Ramírez, Fidel ; Dündar, Friederike ; Diehl, Sarah ; Grüning, Björn A ; Manke, Thomas

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W187-W191 [Periódico revisado por pares]

England: Oxford University Press

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2
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
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The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community

Jain, Miten ; Olsen, Hugh E ; Paten, Benedict ; Akeson, Mark

Genome Biology, 2016-11, Vol.17 (1), p.239, Article 239 [Periódico revisado por pares]

England: BioMed Central Ltd

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly
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Integrating Hi-C links with assembly graphs for chromosome-scale assembly

Ghurye, Jay ; Rhie, Arang ; Walenz, Brian P ; Schmitt, Anthony ; Selvaraj, Siddarth ; Pop, Mihai ; Phillippy, Adam M ; Koren, Sergey Ioshikhes, Ilya

PLoS computational biology, 2019-08, Vol.15 (8), p.e1007273-e1007273 [Periódico revisado por pares]

United States: Public Library of Science

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4
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

Caporaso, J Gregory ; Lauber, Christian L ; Walters, William A ; Berg-Lyons, Donna ; Huntley, James ; Fierer, Noah ; Owens, Sarah M ; Betley, Jason ; Fraser, Louise ; Bauer, Markus ; Gormley, Niall ; Gilbert, Jack A ; Smith, Geoff ; Knight, Rob

The ISME Journal, 2012-08, Vol.6 (8), p.1621-1624 [Periódico revisado por pares]

England: Nature Publishing Group

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5
From RNA-seq reads to differential expression results
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From RNA-seq reads to differential expression results

Oshlack, Alicia ; Robinson, Mark D ; Young, Matthew D

Genome biology, 2010-01, Vol.11 (12), p.220-220 [Periódico revisado por pares]

England: BioMed Central Ltd

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6
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
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AdapterRemoval v2: rapid adapter trimming, identification, and read merging

Schubert, Mikkel ; Lindgreen, Stinus ; Orlando, Ludovic

BMC research notes, 2016-02, Vol.9 (1), p.88-88, Article 88 [Periódico revisado por pares]

England: BioMed Central

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7
Mendelian Gene Discovery: Fast and Furious with No End in Sight
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Mendelian Gene Discovery: Fast and Furious with No End in Sight

Bamshad, Michael J. ; Nickerson, Deborah A. ; Chong, Jessica X.

American journal of human genetics, 2019-09, Vol.105 (3), p.448-455 [Periódico revisado por pares]

United States: Elsevier Inc

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8
Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly
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Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

Wang, Ou ; Chin, Robert ; Cheng, Xiaofang ; Wu, Michelle Ka Yan ; Mao, Qing ; Tang, Jingbo ; Sun, Yuhui ; Anderson, Ellis ; Lam, Han K ; Chen, Dan ; Zhou, Yujun ; Wang, Linying ; Fan, Fei ; Zou, Yan ; Xie, Yinlong ; Zhang, Rebecca Yu ; Drmanac, Snezana ; Nguyen, Darlene ; Xu, Chongjun ; Villarosa, Christian ; Gablenz, Scott ; Barua, Nina ; Nguyen, Staci ; Tian, Wenlan ; Liu, Jia Sophie ; Wang, Jingwan ; Liu, Xiao ; Qi, Xiaojuan ; Chen, Ao ; Wang, He ; Dong, Yuliang ; Zhang, Wenwei ; Alexeev, Andrei ; Yang, Huanming ; Wang, Jian ; Kristiansen, Karsten ; Xu, Xun ; Drmanac, Radoje ; Peters, Brock A

Genome research, 2019-05, Vol.29 (5), p.798-808 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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9
Inexpensive multiplexed library preparation for megabase-sized genomes
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Inexpensive multiplexed library preparation for megabase-sized genomes

Baym, Michael ; Kryazhimskiy, Sergey ; Lieberman, Tami D ; Chung, Hattie ; Desai, Michael M ; Kishony, Roy Green, Stefan J.

PloS one, 2015-05, Vol.10 (5), p.e0128036-e0128036 [Periódico revisado por pares]

United States: Public Library of Science

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10
Trycycler: consensus long-read assemblies for bacterial genomes
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Trycycler: consensus long-read assemblies for bacterial genomes

Wick, Ryan R ; Judd, Louise M ; Cerdeira, Louise T ; Hawkey, Jane ; Méric, Guillaume ; Vezina, Ben ; Wyres, Kelly L ; Holt, Kathryn E

Genome Biology, 2021-09, Vol.22 (1), p.266-266, Article 266 [Periódico revisado por pares]

England: BioMed Central Ltd

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