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miRNA activity inferred from single cell mRNA expression
miRNA activity inferred from single cell mRNA expression
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miRNA activity inferred from single cell mRNA expression

Nielsen, Morten Muhlig ; Pedersen, Jakob Skou

Scientific reports, 2021-04, Vol.11 (1), p.9170-9170, Article 9170 [Periódico revisado por pares]

England: Nature Publishing Group

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Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis
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Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis

Taber, Ann ; Christensen, Emil ; Lamy, Philippe ; Nordentoft, Iver ; Prip, Frederik ; Lindskrog, Sia Viborg ; Birkenkamp-Demtröder, Karin ; Okholm, Trine Line Hauge ; Knudsen, Michael ; Pedersen, Jakob Skou ; Steiniche, Torben ; Agerbæk, Mads ; Jensen, Jørgen Bjerggaard ; Dyrskjøt, Lars

Nature communications, 2020-09, Vol.11 (1), p.4858-15, Article 4858 [Periódico revisado por pares]

England: Nature Publishing Group

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3
Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue
Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue
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Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue

Hedegaard, Jakob ; Thorsen, Kasper ; Lund, Mette Katrine ; Hein, Anne-Mette K ; Hamilton-Dutoit, Stephen Jacques ; Vang, Søren ; Nordentoft, Iver ; Birkenkamp-Demtröder, Karin ; Kruhøffer, Mogens ; Hager, Henrik ; Knudsen, Bjarne ; Andersen, Claus Lindbjerg ; Sørensen, Karina Dalsgaard ; Pedersen, Jakob Skou ; Ørntoft, Torben Falck ; Dyrskjøt, Lars Zuo, Zhuang

PloS one, 2014-05, Vol.9 (5), p.e98187-e98187 [Periódico revisado por pares]

United States: Public Library of Science

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4
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization
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SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization

Damas, Nkerorema Djodji ; Marcatti, Michela ; Côme, Christophe ; Christensen, Lise Lotte ; Nielsen, Morten Muhlig ; Baumgartner, Roland ; Gylling, Helene Maria ; Maglieri, Giulia ; Rundsten, Carsten Friis ; Seemann, Stefan E ; Rapin, Nicolas ; Thézenas, Simon ; Vang, Søren ; Ørntoft, Torben ; Andersen, Claus Lindbjerg ; Pedersen, Jakob Skou ; Lund, Anders H

Nature communications, 2016-12, Vol.7 (1), p.13875-13875, Article 13875 [Periódico revisado por pares]

England: Nature Publishing Group

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5
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
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Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression

Okholm, Trine Line Hauge ; Sathe, Shashank ; Park, Samuel S ; Kamstrup, Andreas Bjerregaard ; Rasmussen, Asta Mannstaedt ; Shankar, Archana ; Chua, Zong Ming ; Fristrup, Niels ; Nielsen, Morten Muhlig ; Vang, Søren ; Dyrskjøt, Lars ; Aigner, Stefan ; Damgaard, Christian Kroun ; Yeo, Gene W ; Pedersen, Jakob Skou

Genome medicine, 2020-12, Vol.12 (1), p.112-22, Article 112 [Periódico revisado por pares]

England: BioMed Central Ltd

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6
miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells
miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells
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miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells

Rasmussen, Mads Heilskov ; Lyskjær, Iben ; Jersie-Christensen, Rosa Rakownikow ; Tarpgaard, Line Schmidt ; Primdal-Bengtson, Bjarke ; Nielsen, Morten Muhlig ; Pedersen, Jakob Skou ; Hansen, Tine Plato ; Hansen, Flemming ; Olsen, Jesper Velgaard ; Pfeiffer, Per ; Ørntoft, Torben Falck ; Andersen, Claus Lindbjerg

Nature communications, 2016-08, Vol.7 (1), p.12436-12436, Article 12436 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Identification and classification of conserved RNA secondary structures in the human genome
Identification and classification of conserved RNA secondary structures in the human genome
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Identification and classification of conserved RNA secondary structures in the human genome

Pedersen, Jakob Skou ; Bejerano, Gill ; Siepel, Adam ; Rosenbloom, Kate ; Lindblad-Toh, Kerstin ; Lander, Eric S ; Kent, Jim ; Miller, Webb ; Haussler, David Durbin, Richard

PLoS computational biology, 2006-04, Vol.2 (4), p.e33-e33 [Periódico revisado por pares]

United States: Public Library of Science

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8
Sequence dependencies and mutation rates of localized mutational processes in cancer
Sequence dependencies and mutation rates of localized mutational processes in cancer
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Sequence dependencies and mutation rates of localized mutational processes in cancer

Poulsgaard, Gustav Alexander ; Sarensen, Simon Grund ; Juul, Randi Istrup ; Nielsen, Morten Muhlig ; Pedersen, Jakob Skou

Genome medicine, 2023-08, Vol.15 (1), p.1-63, Article 63 [Periódico revisado por pares]

London: BioMed Central Ltd

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9
Error-Corrected Deep Targeted Sequencing of Circulating Cell-Free DNA from Colorectal Cancer Patients for Sensitive Detection of Circulating Tumor DNA
Error-Corrected Deep Targeted Sequencing of Circulating Cell-Free DNA from Colorectal Cancer Patients for Sensitive Detection of Circulating Tumor DNA
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Error-Corrected Deep Targeted Sequencing of Circulating Cell-Free DNA from Colorectal Cancer Patients for Sensitive Detection of Circulating Tumor DNA

Frydendahl, Amanda ; Rasmussen, Mads Heilskov ; Jensen, Sarah Østrup ; Henriksen, Tenna Vesterman ; Demuth, Christina ; Diekema, Mathilde ; Ditzel, Henrik Jørn ; Wen, Sara Witting Christensen ; Pedersen, Jakob Skou ; Dyrskjøt, Lars ; Andersen, Claus Lindbjerg

International journal of molecular sciences, 2024-04, Vol.25 (8), p.4252 [Periódico revisado por pares]

Switzerland: MDPI AG

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10
Significance evaluation in factor graphs
Significance evaluation in factor graphs
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Significance evaluation in factor graphs

Madsen, Tobias ; Hobolth, Asger ; Jensen, Jens Ledet ; Pedersen, Jakob Skou

BMC bioinformatics, 2017-03, Vol.18 (1), p.199-199, Article 199 [Periódico revisado por pares]

England: BioMed Central

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