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DELLY: structural variant discovery by integrated paired-end and split-read analysis
DELLY: structural variant discovery by integrated paired-end and split-read analysis
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DELLY: structural variant discovery by integrated paired-end and split-read analysis

Rausch, Tobias ; Zichner, Thomas ; Schlattl, Andreas ; Stütz, Adrian M ; Benes, Vladimir ; Korbel, Jan O

Bioinformatics, 2012-09, Vol.28 (18), p.i333-i339 [Periódico revisado por pares]

England: Oxford University Press

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2
Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
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Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking

Weischenfeldt, Joachim ; Dubash, Taronish ; Drainas, Alexandros P ; Mardin, Balca R ; Chen, Yuanyuan ; Stütz, Adrian M ; Waszak, Sebastian M ; Bosco, Graziella ; Halvorsen, Ann Rita ; Raeder, Benjamin ; Efthymiopoulos, Theocharis ; Erkek, Serap ; Siegl, Christine ; Brenner, Hermann ; Brustugun, Odd Terje ; Dieter, Sebastian M ; Northcott, Paul A ; Petersen, Iver ; Pfister, Stefan M ; Schneider, Martin ; Solberg, Steinar K ; Thunissen, Erik ; Weichert, Wilko ; Zichner, Thomas ; Thomas, Roman ; Peifer, Martin ; Helland, Aslaug ; Ball, Claudia R ; Jechlinger, Martin ; Sotillo, Rocio ; Glimm, Hanno ; Korbel, Jan O

Nature genetics, 2017-01, Vol.49 (1), p.65-74 [Periódico revisado por pares]

United States: Nature Publishing Group

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3
The genomic and transcriptomic landscape of a HeLa cell line
The genomic and transcriptomic landscape of a HeLa cell line
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The genomic and transcriptomic landscape of a HeLa cell line

Landry, Jonathan J M ; Pyl, Paul Theodor ; Rausch, Tobias ; Zichner, Thomas ; Tekkedil, Manu M ; Stütz, Adrian M ; Jauch, Anna ; Aiyar, Raeka S ; Pau, Gregoire ; Delhomme, Nicolas ; Gagneur, Julien ; Korbel, Jan O ; Huber, Wolfgang ; Steinmetz, Lars M

G3 : genes - genomes - genetics, 2013-08, Vol.3 (8), p.1213-1224 [Periódico revisado por pares]

United States: Genetics Society of America

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4
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

Waszak, Sebastian M ; Hasin, Yehudit ; Zichner, Thomas ; Olender, Tsviya ; Keydar, Ifat ; Khen, Miriam ; Stütz, Adrian M ; Schlattl, Andreas ; Lancet, Doron ; Korbel, Jan O Wasserman, Wyeth W.

PLoS computational biology, 2010-11, Vol.6 (11), p.e1000988-e1000988 [Periódico revisado por pares]

United States: Public Library of Science

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5
Recurrent MET fusion genes represent a drug target in pediatric glioblastoma
Recurrent MET fusion genes represent a drug target in pediatric glioblastoma
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Recurrent MET fusion genes represent a drug target in pediatric glioblastoma

Bender, Sebastian ; Gronych, Jan ; Warnatz, Hans-Jorg ; Hutter, Barbara ; Grobner, Susanne ; Ryzhova, Marina ; Pfaff, Elke ; Hovestadt, Volker ; Weinberg, Florian ; Halbach, Sebastian ; Kool, Marcel ; Northcott, Paul A ; Sturm, Dominik ; Bjerke, Lynn ; Zichner, Thomas ; Stuetz, Adrian M ; Schramm, Kathrin ; Huang, Bingding ; Buchhalter, Ivo ; Heinold, Michael ; Risch, Thomas ; Worst, Barbara C ; van Tilburg, Cornelis M ; Weber, Ursula D ; Zapatka, Marc ; Raeder, Benjamin ; Milford, David ; Heiland, Sabine ; von Kalle, Christof ; Previti, Christopher ; Lawerenz, Chris ; Kulozik, Andreas E ; Unterberg, Andreas ; Witt, Olaf ; von Deimling, Andreas ; Capper, David ; Truffaux, Nathalene ; Grill, Jacques ; Jabado, Nada ; Sehested, Astrid M ; Sumerauer, David ; Brahim, Dorra Hmida-Ben ; Trabelsi, Saoussen ; Ng, Ho-Keung ; Zagzag, David ; Allen, Jeffrey C ; Karajannis, Matthias A ; Gottardo, Nicholas G ; Jones, Chris ; Korbel, Jan O ; et. al

Nature medicine, 2016-11, Vol.22 (11), p.1314-1320 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations
Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations
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Genome Sequencing of Pediatric Medulloblastoma Links Catastrophic DNA Rearrangements with TP53 Mutations

Rausch, Tobias ; Jones, David T.W. ; Zapatka, Marc ; Stütz, Adrian M. ; Zichner, Thomas ; Weischenfeldt, Joachim ; Jäger, Natalie ; Remke, Marc ; Shih, David ; Northcott, Paul A. ; Pfaff, Elke ; Tica, Jelena ; Wang, Qi ; Massimi, Luca ; Witt, Hendrik ; Bender, Sebastian ; Pleier, Sabrina ; Cin, Huriye ; Hawkins, Cynthia ; Beck, Christian ; von Deimling, Andreas ; Hans, Volkmar ; Brors, Benedikt ; Eils, Roland ; Scheurlen, Wolfram ; Blake, Jonathon ; Benes, Vladimir ; Kulozik, Andreas E. ; Witt, Olaf ; Martin, Dianna ; Zhang, Cindy ; Porat, Rinnat ; Merino, Diana M. ; Wasserman, Jonathan ; Jabado, Nada ; Fontebasso, Adam ; Bullinger, Lars ; Rücker, Frank G. ; Döhner, Konstanze ; Döhner, Hartmut ; Koster, Jan ; Molenaar, Jan J. ; Versteeg, Rogier ; Kool, Marcel ; Tabori, Uri ; Malkin, David ; Korshunov, Andrey ; Taylor, Michael D. ; Lichter, Peter ; Pfister, Stefan M. ; Korbel, Jan O.

Cell, 2012-01, Vol.148 (1-2), p.59-71 [Periódico revisado por pares]

United States: Elsevier Inc

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7
Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer
Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer
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Integrative Genomic Analyses Reveal an Androgen-Driven Somatic Alteration Landscape in Early-Onset Prostate Cancer

Weischenfeldt, Joachim ; Simon, Ronald ; Feuerbach, Lars ; Schlangen, Karin ; Weichenhan, Dieter ; Minner, Sarah ; Wuttig, Daniela ; Warnatz, Hans-Jörg ; Stehr, Henning ; Rausch, Tobias ; Jäger, Natalie ; Gu, Lei ; Bogatyrova, Olga ; Stütz, Adrian M. ; Claus, Rainer ; Eils, Jürgen ; Eils, Roland ; Gerhäuser, Clarissa ; Huang, Po-Hsien ; Hutter, Barbara ; Kabbe, Rolf ; Lawerenz, Christian ; Radomski, Sylwester ; Bartholomae, Cynthia C. ; Fälth, Maria ; Gade, Stephan ; Schmidt, Manfred ; Amschler, Nina ; Haß, Thomas ; Galal, Rami ; Gjoni, Jovisa ; Kuner, Ruprecht ; Baer, Constance ; Masser, Sawinee ; von Kalle, Christof ; Zichner, Thomas ; Benes, Vladimir ; Raeder, Benjamin ; Mader, Malte ; Amstislavskiy, Vyacheslav ; Avci, Meryem ; Lehrach, Hans ; Parkhomchuk, Dmitri ; Sultan, Marc ; Burkhardt, Lia ; Graefen, Markus ; Huland, Hartwig ; Kluth, Martina ; Krohn, Antje ; Sirma, Hüseyin ; Stumm, Laura ; Steurer, Stefan ; Grupp, Katharina ; Sültmann, Holger ; Sauter, Guido ; Plass, Christoph ; Brors, Benedikt ; Yaspo, Marie-Laure ; Korbel, Jan O. ; Schlomm, Thorsten

Cancer cell, 2013-02, Vol.23 (2), p.159-170 [Periódico revisado por pares]

United States: Elsevier Inc

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8
SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines
SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines
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SMARCA2-deficiency confers sensitivity to targeted inhibition of SMARCA4 in esophageal squamous cell carcinoma cell lines

Ehrenhöfer-Wölfer, Katharina ; Puchner, Teresa ; Schwarz, Cornelia ; Rippka, Janine ; Blaha-Ostermann, Silvia ; Strobl, Ursula ; Hörmann, Alexandra ; Bader, Gerd ; Kornigg, Stefan ; Zahn, Stephan ; Sommergruber, Wolfgang ; Schweifer, Norbert ; Zichner, Thomas ; Schlattl, Andreas ; Neumüller, Ralph A ; Shi, Junwei ; Vakoc, Christopher R ; Kögl, Manfred ; Petronczki, Mark ; Kraut, Norbert ; Pearson, Mark A ; Wöhrle, Simon

Scientific reports, 2019-08, Vol.9 (1), p.11661-12, Article 11661 [Periódico revisado por pares]

England: Nature Publishing Group

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9
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
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Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort

Waszak, Sebastian M ; Northcott, Paul A ; Buchhalter, Ivo ; Robinson, Giles W ; Sutter, Christian ; Groebner, Susanne ; Grund, Kerstin B ; Brugières, Laurence ; Jones, David TW ; Pajtler, Kristian W ; Morrissy, A Sorana ; Kool, Marcel ; Sturm, Dominik ; Chavez, Lukas ; Ernst, Aurelie ; Brabetz, Sebastian ; Hain, Michael ; Zichner, Thomas ; Segura-Wang, Maia ; Weischenfeldt, Joachim ; Rausch, Tobias ; Mardin, Balca R ; Zhou, Xin ; Baciu, Cristina ; Lawerenz, Christian ; Chan, Jennifer A ; Varlet, Pascale ; Guerrini-Rousseau, Lea ; Fults, Daniel W ; Grajkowska, Wiesława ; Hauser, Peter ; Jabado, Nada ; Ra, Young-Shin ; Zitterbart, Karel ; Shringarpure, Suyash S ; De La Vega, Francisco M ; Bustamante, Carlos D ; Ng, Ho-Keung ; Perry, Arie ; MacDonald, Tobey J ; Hernáiz Driever, Pablo ; Bendel, Anne E ; Bowers, Daniel C ; McCowage, Geoffrey ; Chintagumpala, Murali M ; Cohn, Richard ; Hassall, Timothy ; Fleischhack, Gudrun ; Eggen, Tone ; Wesenberg, Finn ; Feychting, Maria ; Lannering, Birgitta ; Schüz, Joachim ; Johansen, Christoffer ; Andersen, Tina V ; Röösli, Martin ; Kuehni, Claudia E ; Grotzer, Michael ; Kjaerheim, Kristina ; Monoranu, Camelia M ; Archer, Tenley C ; Duke, Elizabeth ; Pomeroy, Scott L ; Shelagh, Redmond ; Frank, Stephan ; Sumerauer, David ; Scheurlen, Wolfram ; Ryzhova, Marina V ; Milde, Till ; Kratz, Christian P ; Samuel, David ; Zhang, Jinghui ; Solomon, David A ; Marra, Marco ; Eils, Roland ; Bartram, Claus R ; von Hoff, Katja ; Rutkowski, Stefan ; Ramaswamy, Vijay ; Gilbertson, Richard J ; Korshunov, Andrey ; Taylor, Michael D ; Lichter, Peter ; Malkin, David ; Gajjar, Amar ; Korbel, Jan O ; Pfister, Stefan M

Lancet Oncol 2018-06

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10
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort
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Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort

Waszak, Sebastian M ; Northcott, Paul A ; Buchhalter, Ivo ; Robinson, Giles W ; Sutter, Christian ; Groebner, Susanne ; Grund, Kerstin B ; Brugières, Laurence ; Jones, David TW ; Pajtler, Kristian W ; Morrissy, A Sorana ; Kool, Marcel ; Sturm, Dominik ; Chavez, Lukas ; Ernst, Aurelie ; Brabetz, Sebastian ; Hain, Michael ; Zichner, Thomas ; Segura-Wang, Maia ; Weischenfeldt, Joachim ; Rausch, Tobias ; Mardin, Balca R ; Zhou, Xin ; Baciu, Cristina ; Lawerenz, Christian ; Chan, Jennifer A ; Varlet, Pascale ; Guerrini-Rousseau, Lea ; Fults, Daniel W ; Grajkowska, Wiesława ; Hauser, Peter ; Jabado, Nada ; Ra, Young-Shin ; Zitterbart, Karel ; Shringarpure, Suyash S ; De La Vega, Francisco M ; Bustamante, Carlos D ; Ng, Ho-Keung ; Perry, Arie ; MacDonald, Tobey J ; Hernáiz Driever, Pablo ; Bendel, Anne E ; Bowers, Daniel C ; McCowage, Geoffrey ; Chintagumpala, Murali M ; Cohn, Richard ; Hassall, Timothy ; Fleischhack, Gudrun ; Eggen, Tone ; Wesenberg, Finn ; Feychting, Maria ; Lannering, Birgitta ; Schüz, Joachim ; Johansen, Christoffer ; Andersen, Tina V ; Röösli, Martin ; Kuehni, Claudia E ; Grotzer, Michael ; Kjaerheim, Kristina ; Monoranu, Camelia M ; Archer, Tenley C ; Duke, Elizabeth ; Pomeroy, Scott L ; Shelagh, Redmond ; Frank, Stephan ; Sumerauer, David ; Scheurlen, Wolfram ; Ryzhova, Marina V ; Milde, Till ; Kratz, Christian P ; Samuel, David ; Zhang, Jinghui ; Solomon, David A ; Marra, Marco ; Eils, Roland ; Bartram, Claus R ; von Hoff, Katja ; Rutkowski, Stefan ; Ramaswamy, Vijay ; Gilbertson, Richard J ; Korshunov, Andrey ; Taylor, Michael D ; Lichter, Peter ; Malkin, David ; Gajjar, Amar ; Korbel, Jan O ; Pfister, Stefan M

The Lancet. Oncology, 2018-06, Vol.19 (6), p.785-798

eScholarship, University of California

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