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RCSB Protein Data Bank: Enabling biomedical research and drug discovery
RCSB Protein Data Bank: Enabling biomedical research and drug discovery
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RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Goodsell, David S. ; Zardecki, Christine ; Di Costanzo, Luigi ; Duarte, Jose M. ; Hudson, Brian P. ; Persikova, Irina ; Segura, Joan ; Shao, Chenghua ; Voigt, Maria ; Westbrook, John D. ; Young, Jasmine Y. ; Burley, Stephen K.

Protein science, 2020-01, Vol.29 (1), p.52-65 [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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2
The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank
The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank
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The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

Westbrook, John D ; Shao, Chenghua ; Feng, Zukang ; Zhuravleva, Marina ; Velankar, Sameer ; Young, Jasmine

Bioinformatics, 2015-04, Vol.31 (8), p.1274-1278 [Periódico revisado por pares]

England: Oxford University Press

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3
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
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D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Parks, Conor D. ; Gaieb, Zied ; Chiu, Michael ; Yang, Huanwang ; Shao, Chenghua ; Walters, W. Patrick ; Jansen, Johanna M. ; McGaughey, Georgia ; Lewis, Richard A. ; Bembenek, Scott D. ; Ameriks, Michael K. ; Mirzadegan, Tara ; Burley, Stephen K. ; Amaro, Rommie E. ; Gilson, Michael K.

Journal of computer-aided molecular design, 2020-02, Vol.34 (2), p.99-119 [Periódico revisado por pares]

Cham: Springer International Publishing

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4
D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
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D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Gaieb, Zied ; Liu, Shuai ; Gathiaka, Symon ; Chiu, Michael ; Yang, Huanwang ; Shao, Chenghua ; Feher, Victoria A. ; Walters, W. Patrick ; Kuhn, Bernd ; Rudolph, Markus G. ; Burley, Stephen K. ; Gilson, Michael K. ; Amaro, Rommie E.

Journal of computer-aided molecular design, 2018-01, Vol.32 (1), p.1-20 [Periódico revisado por pares]

Cham: Springer International Publishing

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5
D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings
D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings
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D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings

Gaieb, Zied ; Parks, Conor D. ; Chiu, Michael ; Yang, Huanwang ; Shao, Chenghua ; Walters, W. Patrick ; Lambert, Millard H. ; Nevins, Neysa ; Bembenek, Scott D. ; Ameriks, Michael K. ; Mirzadegan, Tara ; Burley, Stephen K. ; Amaro, Rommie E. ; Gilson, Michael K.

Journal of computer-aided molecular design, 2019-01, Vol.33 (1), p.1-18 [Periódico revisado por pares]

Cham: Springer International Publishing

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6
EMDB—the Electron Microscopy Data Bank
EMDB—the Electron Microscopy Data Bank
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EMDB—the Electron Microscopy Data Bank

Turner, Jack ; Abbott, Sanja ; Fonseca, Neli ; Pye, Ryan ; Carrijo, Lucas ; Duraisamy, Amudha Kumari ; Salih, Osman ; Wang, Zhe ; Kleywegt, Gerard J ; Morris, Kyle L ; Patwardhan, Ardan ; Burley, Stephen K ; Crichlow, Gregg ; Feng, Zukang ; Flatt, Justin W ; Ghosh, Sutapa ; Hudson, Brian P ; Lawson, Catherine L ; Liang, Yuhe ; Peisach, Ezra ; Persikova, Irina ; Sekharan, Monica ; Shao, Chenghua ; Young, Jasmine ; Velankar, Sameer ; Armstrong, David ; Bage, Marcus ; Bueno, Wesley Morellato ; Evans, Genevieve ; Gaborova, Romana ; Ganguly, Sudakshina ; Gupta, Deepti ; Harrus, Deborah ; Tanweer, Ahsan ; Bansal, Manju ; Rangannan, Vetriselvi ; Kurisu, Genji ; Cho, Hasumi ; Ikegawa, Yasuyo ; Kengaku, Yumiko ; Kim, Ju Yaen ; Niwa, Satomi ; Sato, Junko ; Takuwa, Ayako ; Yu, Jian ; Hoch, Jeffrey C ; Baskaran, Kumaran ; Xu, Wenqing ; Zhang, Weizhe ; Ma, Xiaodan

Nucleic acids research, 2024-01, Vol.52 (D1), p.D456-D465 [Periódico revisado por pares]

England: Oxford University Press

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7
Trendspotting in the Protein Data Bank
Trendspotting in the Protein Data Bank
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Trendspotting in the Protein Data Bank

Berman, Helen M. ; Coimbatore Narayanan, Buvaneswari ; Costanzo, Luigi Di ; Dutta, Shuchismita ; Ghosh, Sutapa ; Hudson, Brian P. ; Lawson, Catherine L. ; Peisach, Ezra ; Prlić, Andreas ; Rose, Peter W. ; Shao, Chenghua ; Yang, Huanwang ; Young, Jasmine ; Zardecki, Christine

FEBS letters, 2013-04, Vol.587 (8), p.1036-1045 [Periódico revisado por pares]

England: Elsevier B.V

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8
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students
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Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

Burley, Stephen K. ; Berman, Helen M. ; Duarte, Jose M. ; Feng, Zukang ; Flatt, Justin W. ; Hudson, Brian P. ; Lowe, Robert ; Peisach, Ezra ; Piehl, Dennis W. ; Rose, Yana ; Sali, Andrej ; Sekharan, Monica ; Shao, Chenghua ; Vallat, Brinda ; Voigt, Maria ; Westbrook, John D. ; Young, Jasmine Y. ; Zardecki, Christine

Biomolecules (Basel, Switzerland), 2022-10, Vol.12 (10), p.1425 [Periódico revisado por pares]

Basel: MDPI AG

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9
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank
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Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

Dutta, Shuchismita ; Dimitropoulos, Dimitris ; Feng, Zukang ; Persikova, Irina ; Sen, Sanchayita ; Shao, Chenghua ; Westbrook, John ; Young, Jasmine ; Zhuravleva, Marina A. ; Kleywegt, Gerard J. ; Berman, Helen M.

Biopolymers, 2014-06, Vol.101 (6), p.659-668 [Periódico revisado por pares]

United States: Blackwell Publishing Ltd

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10
Crystallographic Analysis of Calcium-dependent Heparin Binding to Annexin A2
Crystallographic Analysis of Calcium-dependent Heparin Binding to Annexin A2
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Crystallographic Analysis of Calcium-dependent Heparin Binding to Annexin A2

Shao, Chenghua ; Zhang, Fuming ; Kemp, Melissa M. ; Linhardt, Robert J. ; Waisman, David M. ; Head, James F. ; Seaton, Barbara A.

The Journal of biological chemistry, 2006-10, Vol.281 (42), p.31689-31695 [Periódico revisado por pares]

United States: American Society for Biochemistry and Molecular Biology

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