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Refinado por: autor: Tsuchiya, Yuko remover
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1
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures
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Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Kinjo, Akira R ; Bekker, Gert-Jan ; Suzuki, Hirofumi ; Tsuchiya, Yuko ; Kawabata, Takeshi ; Ikegawa, Yasuyo ; Nakamura, Haruki

Nucleic acids research, 2017-01, Vol.45 (D1), p.D282-D288 [Periódico revisado por pares]

England: Oxford University Press

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2
New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)
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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj)

Kinjo, Akira R. ; Bekker, Gert‐Jan ; Wako, Hiroshi ; Endo, Shigeru ; Tsuchiya, Yuko ; Sato, Hiromu ; Nishi, Hafumi ; Kinoshita, Kengo ; Suzuki, Hirofumi ; Kawabata, Takeshi ; Yokochi, Masashi ; Iwata, Takeshi ; Kobayashi, Naohiro ; Fujiwara, Toshimichi ; Kurisu, Genji ; Nakamura, Haruki

Protein science, 2018-01, Vol.27 (1), p.95-102 [Periódico revisado por pares]

United States: Wiley Subscription Services, Inc

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3
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies
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Kotai Antibody Builder: automated high-resolution structural modeling of antibodies

Yamashita, Kazuo ; Ikeda, Kazuyoshi ; Amada, Karlou ; Liang, Shide ; Tsuchiya, Yuko ; Nakamura, Haruki ; Shirai, Hiroki ; Standley, Daron M

Bioinformatics (Oxford, England), 2014-11, Vol.30 (22), p.3279-3280 [Periódico revisado por pares]

England

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4
High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations
High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations
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High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

Shirai, Hiroki ; Ikeda, Kazuyoshi ; Yamashita, Kazuo ; Tsuchiya, Yuko ; Sarmiento, Jamica ; Liang, Shide ; Morokata, Tatsuaki ; Mizuguchi, Kenji ; Higo, Junichi ; Standley, Daron M. ; Nakamura, Haruki

Proteins, structure, function, and bioinformatics, 2014-08, Vol.82 (8), p.1624-1635 [Periódico revisado por pares]

United States: Blackwell Publishing Ltd

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5
Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces
Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces
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Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces

Tsuchiya, Yuko ; Kinoshita, Kengo ; Nakamura, Haruki

Proteins, structure, function, and bioinformatics, 2004-06, Vol.55 (4), p.885-894 [Periódico revisado por pares]

Hoboken: Wiley Subscription Services, Inc., A Wiley Company

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6
Silencing the constitutive active transcription factor CREB by the LKB1‐SIK signaling cascade
Silencing the constitutive active transcription factor CREB by the LKB1‐SIK signaling cascade
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Silencing the constitutive active transcription factor CREB by the LKB1‐SIK signaling cascade

Katoh, Yoshiko ; Takemori, Hiroshi ; Lin, Xing‐zi ; Tamura, Mitsuhiro ; Muraoka, Masaaki ; Satoh, Tomohiro ; Tsuchiya, Yuko ; Min, Li ; Doi, Junko ; Miyauchi, Akira ; Witters, Lee A. ; Nakamura, Haruki ; Okamoto, Mitsuhiro

The FEBS journal, 2006-06, Vol.273 (12), p.2730-2748 [Periódico revisado por pares]

Oxford, UK: Blackwell Publishing Ltd

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7
Discrimination between biological interfaces and crystal-packing contacts
Discrimination between biological interfaces and crystal-packing contacts
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Discrimination between biological interfaces and crystal-packing contacts

Tsuchiya, Yuko ; Nakamura, Haruki ; Kinoshita, Kengo

Advances and applications in bioinformatics and chemistry, 2008, Vol.1 (default), p.99-113 [Periódico revisado por pares]

New Zealand: Taylor & Francis Ltd

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8
Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction
Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction
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Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction

Tsuchiya, Yuko ; Kanamori, Eiji ; Nakamura, Haruki ; Kinoshita, Kengo

Advances and applications in bioinformatics and chemistry, 2009, Vol.2 (default), p.79-100 [Periódico revisado por pares]

New Zealand: Taylor & Francis Ltd

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9
2P449 Improvement of the method for discriminating between biological and crystal-packing contacts in protein crystals(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
2P449 Improvement of the method for discriminating between biological and crystal-packing contacts in protein crystals(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
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2P449 Improvement of the method for discriminating between biological and crystal-packing contacts in protein crystals(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Tsuchiya, Yuko ; Kinoshita, Kengo ; Ito, Nobutoshi ; Nakamura, Haruki

Seibutsu butsuri = Biophysics, 2006, Vol.46 (supplement2), p.S408 [Periódico revisado por pares]

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10
Analysis of Complementarity of Protein-DNA Interactions Using the Electrostatic Potential and the Molecular Surface Geometry
Analysis of Complementarity of Protein-DNA Interactions Using the Electrostatic Potential and the Molecular Surface Geometry
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Analysis of Complementarity of Protein-DNA Interactions Using the Electrostatic Potential and the Molecular Surface Geometry

Tsuchiya, Yuko ; Kinoshita, Kengo ; Nakamura, Haruki

Genome Informatics, 2002, Vol.13, pp.310-311

Japanese Society for Bioinformatics

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