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The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
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The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

Nilsson, Rolf Henrik ; Larsson, Karl-Henrik ; Taylor, Andy F S ; Bengtsson-Palme, Johan ; Jeppesen, Thomas S ; Schigel, Dmitry ; Kennedy, Peter ; Picard, Kathryn ; Glöckner, Frank Oliver ; Tedersoo, Leho ; Saar, Irja ; Kõljalg, Urmas ; Abarenkov, Kessy

Nucleic acids research, 2019-01, Vol.47 (D1), p.D259-D264 [Periódico revisado por pares]

England: Oxford University Press

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2
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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3
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
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tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes

Chan, Patricia P ; Lin, Brian Y ; Mak, Allysia J ; Lowe, Todd M

Nucleic acids research, 2021-09, Vol.49 (16), p.9077-9096 [Periódico revisado por pares]

Oxford University Press

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4
PEP-FOLD3: faster denovo structure prediction for linear peptides in solution and in complex
PEP-FOLD3: faster denovo structure prediction for linear peptides in solution and in complex
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PEP-FOLD3: faster denovo structure prediction for linear peptides in solution and in complex

Lamiable, Alexis ; Thevenet, Pierre ; Rey, Julien ; Vavrusa, Marek ; Derreumaux, Philippe ; Tufféry, Pierre

Nucleic acids research, 2016-07, Vol.44 (W1), p.W449-W454 [Periódico revisado por pares]

Oxford University Press

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5
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
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JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

Castro-Mondragon, Jaime A ; Riudavets-Puig, Rafael ; Rauluseviciute, Ieva ; Berhanu Lemma, Roza ; Turchi, Laura ; Blanc-Mathieu, Romain ; Lucas, Jeremy ; Boddie, Paul ; Khan, Aziz ; Manosalva Pérez, Nicolás ; Fornes, Oriol ; Leung, Tiffany Y ; Aguirre, Alejandro ; Hammal, Fayrouz ; Schmelter, Daniel ; Baranasic, Damir ; Ballester, Benoit ; Sandelin, Albin ; Lenhard, Boris ; Vandepoele, Klaas ; Wasserman, Wyeth W ; Parcy, François ; Mathelier, Anthony

Nucleic acids research, 2022-01, Vol.50 (D1), p.D165-D173 [Periódico revisado por pares]

England: Oxford University Press

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6
JASPAR 2020: update of the open-access database of transcription factor binding profiles
JASPAR 2020: update of the open-access database of transcription factor binding profiles
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JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, Oriol ; Castro-Mondragon, Jaime A ; Khan, Aziz ; van der Lee, Robin ; Zhang, Xi ; Richmond, Phillip A ; Modi, Bhavi P ; Correard, Solenne ; Gheorghe, Marius ; Baranašić, Damir ; Santana-Garcia, Walter ; Tan, Ge ; Chèneby, Jeanne ; Ballester, Benoit ; Parcy, François ; Sandelin, Albin ; Lenhard, Boris ; Wasserman, Wyeth W ; Mathelier, Anthony

Nucleic acids research, 2020-01, Vol.48 (D1), p.D87-D92 [Periódico revisado por pares]

England: Oxford University Press

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7
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

Couvin, David ; Bernheim, Aude ; Toffano-Nioche, Claire ; Touchon, Marie ; Michalik, Juraj ; Néron, Bertrand ; Rocha, Eduardo P C ; Vergnaud, Gilles ; Gautheret, Daniel ; Pourcel, Christine

Nucleic acids research, 2018-07, Vol.46 (W1), p.W246-W251 [Periódico revisado por pares]

England: Oxford University Press

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8
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
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MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

Dhariwal, Achal ; Chong, Jasmine ; Habib, Salam ; King, Irah L ; Agellon, Luis B ; Xia, Jianguo

Nucleic acids research, 2017-07, Vol.45 (W1), p.W180-W188 [Periódico revisado por pares]

England: Oxford University Press

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9
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

Afgan, Enis ; Baker, Dannon ; van den Beek, Marius ; Blankenberg, Daniel ; Bouvier, Dave ; Čech, Martin ; Chilton, John ; Clements, Dave ; Coraor, Nate ; Eberhard, Carl ; Grüning, Björn ; Guerler, Aysam ; Hillman-Jackson, Jennifer ; Von Kuster, Greg ; Rasche, Eric ; Soranzo, Nicola ; Turaga, Nitesh ; Taylor, James ; Nekrutenko, Anton ; Goecks, Jeremy

Nucleic acids research, 2016-07, Vol.44 (W1), p.W3-W10 [Periódico revisado por pares]

England: Oxford University Press

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10
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
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PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins

Lazar, Tamas ; Martínez-Pérez, Elizabeth ; Quaglia, Federica ; Hatos, András ; Chemes, Lucía B ; Iserte, Javier A ; Méndez, Nicolás A ; Garrone, Nicolás A ; Saldaño, Tadeo E ; Marchetti, Julia ; Rueda, Ana Julia Velez ; Bernadó, Pau ; Blackledge, Martin ; Cordeiro, Tiago N ; Fagerberg, Eric ; Forman-Kay, Julie D ; Fornasari, Maria S ; Gibson, Toby J ; Gomes, Gregory-Neal W ; Gradinaru, Claudiu C ; Head-Gordon, Teresa ; Jensen, Malene Ringkjøbing ; Lemke, Edward A ; Longhi, Sonia ; Marino-Buslje, Cristina ; Minervini, Giovanni ; Mittag, Tanja ; Monzon, Alexander Miguel ; Pappu, Rohit V ; Parisi, Gustavo ; Ricard-Blum, Sylvie ; Ruff, Kiersten M ; Salladini, Edoardo ; Skepö, Marie ; Svergun, Dmitri ; Vallet, Sylvain D ; Varadi, Mihaly ; Tompa, Peter ; Tosatto, Silvio C E ; Piovesan, Damiano

Nucleic acids research, 2021-01, Vol.49 (D1), p.D404-D411 [Periódico revisado por pares]

England: Oxford University Press

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