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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

Feldgarden, Michael ; Brover, Vyacheslav ; Gonzalez-Escalona, Narjol ; Frye, Jonathan G ; Haendiges, Julie ; Haft, Daniel H ; Hoffmann, Maria ; Pettengill, James B ; Prasad, Arjun B ; Tillman, Glenn E ; Tyson, Gregory H ; Klimke, William

Scientific reports, 2021-06, Vol.11 (1), p.12728-12728, Article 12728 [Periódico revisado por pares]

London: Nature Publishing Group

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2
Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations
Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations
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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

Pightling, Arthur W ; Pettengill, James B ; Luo, Yan ; Baugher, Joseph D ; Rand, Hugh ; Strain, Errol

Frontiers in microbiology, 2018-07, Vol.9, p.1482 [Periódico revisado por pares]

Switzerland: Frontiers Media S.A

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3
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments
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Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments

Pettengill, James B ; Rand, Hugh ; Wang, Shizhen S ; Kautter, Donald ; Pightling, Arthur ; Wang, Yu Spanu, Carlo

PloS one, 2022-09, Vol.17 (9), p.e0268470-e0268470 [Periódico revisado por pares]

San Francisco: Public Library of Science

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4
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
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Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation

Pettengill, Emily A ; Pettengill, James B ; Binet, Rachel

Frontiers in microbiology, 2016-01, Vol.6, p.1573-1573 [Periódico revisado por pares]

Switzerland: Frontiers Research Foundation

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5
Interpretative Labor and the Bane of Nonstandardized Metadata in Public Health Surveillance and Food Safety
Interpretative Labor and the Bane of Nonstandardized Metadata in Public Health Surveillance and Food Safety
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Interpretative Labor and the Bane of Nonstandardized Metadata in Public Health Surveillance and Food Safety

Pettengill, James B ; Beal, Jennifer ; Balkey, Maria ; Allard, Marc ; Rand, Hugh ; Timme, Ruth

Clinical infectious diseases, 2021-10, Vol.73 (8), p.1537-1539 [Periódico revisado por pares]

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6
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain
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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Haendiges, Julie ; Davidson, Gordon R ; Pettengill, James B ; Reed, Elizabeth ; Ramachandran, Padmini ; Blessington, Tyann ; Miller, Jesse D ; Anderson, Nathan ; Myoda, Sam ; Brown, Eric W ; Zheng, Jie ; Tikekar, Rohan ; Hoffmann, Maria Mossong, Joël

PloS one, 2021-11, Vol.16 (11), p.e0259471 [Periódico revisado por pares]

United States: Public Library of Science

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7
Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
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Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)

Ottesen, Andrea R ; González Peña, Antonio ; White, James R ; Pettengill, James B ; Li, Cong ; Allard, Sarah ; Rideout, Steven ; Allard, Marc ; Hill, Thomas ; Evans, Peter ; Strain, Errol ; Musser, Steven ; Knight, Rob ; Brown, Eric

BMC microbiology, 2013-05, Vol.13 (1), p.114-114 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data
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CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data

Davis, Steve ; Pettengill, James B ; Luo, Yan ; Payne, Justin ; Shpuntoff, Al ; Rand, Hugh ; Strain, Errol

PeerJ. Computer science, 2015-08, Vol.1, p.e20 [Periódico revisado por pares]

San Diego: PeerJ. Ltd

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9
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence
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Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence

Daeschel, Devin ; Pettengill, James B ; Wang, Yu ; Chen, Yi ; Allard, Marc ; Snyder, Abigail B

BMC genomics, 2022-07, Vol.23 (1), p.1-488, Article 488 [Periódico revisado por pares]

London: BioMed Central Ltd

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10
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples
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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Pettengill, James B ; Pightling, Arthur W ; Baugher, Joseph D ; Rand, Hugh ; Strain, Errol Tang, Haixu

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162 [Periódico revisado por pares]

United States: Public Library of Science

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