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1
PDBe: improved findability of macromolecular structure data in the PDB
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Artigo
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PDBe: improved findability of macromolecular structure data in the PDB

Armstrong, David R ; Berrisford, John M ; Conroy, Matthew J ; Gutmanas, Aleksandras ; Anyango, Stephen ; Choudhary, Preeti ; Clark, Alice R ; Dana, Jose M ; Deshpande, Mandar ; Dunlop, Roisin ; Gane, Paul ; Gáborová, Romana ; Gupta, Deepti ; Haslam, Pauline ; Koča, Jaroslav ; Mak, Lora ; Mir, Saqib ; Mukhopadhyay, Abhik ; Nadzirin, Nurul ; Nair, Sreenath ; Paysan-Lafosse, Typhaine ; Pravda, Lukas ; Sehnal, David ; Salih, Osman ; Smart, Oliver ; Tolchard, James ; Varadi, Mihaly ; Svobodova-Vařeková, Radka ; Zaki, Hossam ; Kleywegt, Gerard J ; Velankar, Sameer

Nucleic acids research, 2020-01, Vol.48 (D1), p.D335-D343 [Periódico revisado por pares]

England: Oxford University Press

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2
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive
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OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

Young, Jasmine Y. ; Westbrook, John D. ; Feng, Zukang ; Sala, Raul ; Peisach, Ezra ; Oldfield, Thomas J. ; Sen, Sanchayita ; Gutmanas, Aleksandras ; Armstrong, David R. ; Berrisford, John M. ; Chen, Li ; Chen, Minyu ; Di Costanzo, Luigi ; Dimitropoulos, Dimitris ; Gao, Guanghua ; Ghosh, Sutapa ; Gore, Swanand ; Guranovic, Vladimir ; Hendrickx, Pieter M.S. ; Hudson, Brian P. ; Igarashi, Reiko ; Ikegawa, Yasuyo ; Kobayashi, Naohiro ; Lawson, Catherine L. ; Liang, Yuhe ; Mading, Steve ; Mak, Lora ; Mir, M. Saqib ; Mukhopadhyay, Abhik ; Patwardhan, Ardan ; Persikova, Irina ; Rinaldi, Luana ; Sanz-Garcia, Eduardo ; Sekharan, Monica R. ; Shao, Chenghua ; Swaminathan, G. Jawahar ; Tan, Lihua ; Ulrich, Eldon L. ; van Ginkel, Glen ; Yamashita, Reiko ; Yang, Huanwang ; Zhuravleva, Marina A. ; Quesada, Martha ; Kleywegt, Gerard J. ; Berman, Helen M. ; Markley, John L. ; Nakamura, Haruki ; Velankar, Sameer ; Burley, Stephen K.

Structure (London), 2017-03, Vol.25 (3), p.536-545 [Periódico revisado por pares]

United States: Elsevier Ltd

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3
Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop
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Artigo
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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Sali, Andrej ; Berman, Helen M. ; Schwede, Torsten ; Trewhella, Jill ; Kleywegt, Gerard ; Burley, Stephen K. ; Markley, John ; Nakamura, Haruki ; Adams, Paul ; Bonvin, Alexandre M.J.J. ; Chiu, Wah ; Peraro, Matteo Dal ; Di Maio, Frank ; Ferrin, Thomas E. ; Grünewald, Kay ; Gutmanas, Aleksandras ; Henderson, Richard ; Hummer, Gerhard ; Iwasaki, Kenji ; Johnson, Graham ; Lawson, Catherine L. ; Meiler, Jens ; Marti-Renom, Marc A. ; Montelione, Gaetano T. ; Nilges, Michael ; Nussinov, Ruth ; Patwardhan, Ardan ; Rappsilber, Juri ; Read, Randy J. ; Saibil, Helen ; Schröder, Gunnar F. ; Schwieters, Charles D. ; Seidel, Claus A.M. ; Svergun, Dmitri ; Topf, Maya ; Ulrich, Eldon L. ; Velankar, Sameer ; Westbrook, John D.

Structure (London), 2015-07, Vol.23 (7), p.1156-1167 [Periódico revisado por pares]

United States: Elsevier Ltd

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4
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
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Artigo
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PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

Mir, Saqib ; Alhroub, Younes ; Anyango, Stephen ; Armstrong, David R ; Berrisford, John M ; Clark, Alice R ; Conroy, Matthew J ; Dana, Jose M ; Deshpande, Mandar ; Gupta, Deepti ; Gutmanas, Aleksandras ; Haslam, Pauline ; Mak, Lora ; Mukhopadhyay, Abhik ; Nadzirin, Nurul ; Paysan-Lafosse, Typhaine ; Sehnal, David ; Sen, Sanchayita ; Smart, Oliver S ; Varadi, Mihaly ; Kleywegt, Gerard J ; Velankar, Sameer

Nucleic acids research, 2018-01, Vol.46 (D1), p.D486-D492 [Periódico revisado por pares]

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5
PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education
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Artigo
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PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education

Varadi, Mihaly ; Anyango, Stephen ; Appasamy, Sri Devan ; Armstrong, David ; Bage, Marcus ; Berrisford, John ; Choudhary, Preeti ; Bertoni, Damian ; Deshpande, Mandar ; Leines, Grisell Diaz ; Ellaway, Joseph ; Evans, Genevieve ; Gaborova, Romana ; Gupta, Deepti ; Gutmanas, Aleksandras ; Harrus, Deborah ; Kleywegt, Gerard J. ; Bueno, Weslley Morellato ; Nadzirin, Nurul ; Nair, Sreenath ; Pravda, Lukas ; Afonso, Marcelo Querino Lima ; Sehnal, David ; Tanweer, Ahsan ; Tolchard, James ; Abrams, Charlotte ; Dunlop, Roisin ; Velankar, Sameer

Protein science, 2022-10, Vol.31 (10), p.e4439-n/a [Periódico revisado por pares]

Hoboken, USA: John Wiley & Sons, Inc

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6
NMR Exchange Format: a unified and open standard for representation of NMR restraint data
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Artigo
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NMR Exchange Format: a unified and open standard for representation of NMR restraint data

Gutmanas, Aleksandras ; Adams, Paul D ; Bardiaux, Benjamin ; Berman, Helen M ; Case, David A ; Fogh, Rasmus H ; Güntert, Peter ; Hendrickx, Pieter M S ; Herrmann, Torsten ; Kleywegt, Gerard J ; Kobayashi, Naohiro ; Lange, Oliver F ; Markley, John L ; Montelione, Gaetano T ; Nilges, Michael ; Ragan, Timothy J ; Schwieters, Charles D ; Tejero, Roberto ; Ulrich, Eldon L ; Velankar, Sameer ; Vranken, Wim F ; Wedell, Jonathan R ; Westbrook, John ; Wishart, David S ; Vuister, Geerten W

Nature structural & molecular biology, 2015-06, Vol.22 (6), p.433-434 [Periódico revisado por pares]

United States: Nature Publishing Group

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7
Blind Testing of Routine, Fully Automated Determination of Protein Structures from NMR Data
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Artigo
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Blind Testing of Routine, Fully Automated Determination of Protein Structures from NMR Data

Rosato, Antonio ; Aramini, James M. ; Arrowsmith, Cheryl ; Bagaria, Anurag ; Baker, David ; Cavalli, Andrea ; Doreleijers, Jurgen F. ; Eletsky, Alexander ; Giachetti, Andrea ; Guerry, Paul ; Gutmanas, Aleksandras ; Güntert, Peter ; He, Yunfen ; Herrmann, Torsten ; Huang, Yuanpeng J. ; Jaravine, Victor ; Jonker, Hendrik R.A. ; Kennedy, Michael A. ; Lange, Oliver F. ; Liu, Gaohua ; Malliavin, Thérèse E. ; Mani, Rajeswari ; Mao, Binchen ; Montelione, Gaetano T. ; Nilges, Michael ; Rossi, Paolo ; van der Schot, Gijs ; Schwalbe, Harald ; Szyperski, Thomas A. ; Vendruscolo, Michele ; Vernon, Robert ; Vranken, Wim F. ; de Vries, Sjoerd ; Vuister, Geerten W. ; Wu, Bin ; Yang, Yunhuang ; Bonvin, Alexandre M.J.J.

Structure (London), 2012-02, Vol.20 (2), p.227-236 [Periódico revisado por pares]

United States: Elsevier Ltd

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8
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
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Artigo
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Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

Young, Jasmine Y ; Westbrook, John D ; Feng, Zukang ; Peisach, Ezra ; Persikova, Irina ; Sala, Raul ; Sen, Sanchayita ; Berrisford, John M ; Swaminathan, G Jawahar ; Oldfield, Thomas J ; Gutmanas, Aleksandras ; Igarashi, Reiko ; Armstrong, David R ; Baskaran, Kumaran ; Chen, Li ; Chen, Minyu ; Clark, Alice R ; Di Costanzo, Luigi ; Dimitropoulos, Dimitris ; Gao, Guanghua ; Ghosh, Sutapa ; Gore, Swanand ; Guranovic, Vladimir ; Hendrickx, Pieter M S ; Hudson, Brian P ; Ikegawa, Yasuyo ; Kengaku, Yumiko ; Lawson, Catherine L ; Liang, Yuhe ; Mak, Lora ; Mukhopadhyay, Abhik ; Narayanan, Buvaneswari ; Nishiyama, Kayoko ; Patwardhan, Ardan ; Sahni, Gaurav ; Sanz-García, Eduardo ; Sato, Junko ; Sekharan, Monica R ; Shao, Chenghua ; Smart, Oliver S ; Tan, Lihua ; van Ginkel, Glen ; Yang, Huanwang ; Zhuravleva, Marina A ; Markley, John L ; Nakamura, Haruki ; Kurisu, Genji ; Kleywegt, Gerard J ; Velankar, Sameer ; Berman, Helen M ; Burley, Stephen K

Database : the journal of biological databases and curation, 2018-01, Vol.2018 [Periódico revisado por pares]

England: Oxford University Press

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9
Community recommendations on cryoEM data archiving and validation
Material Type:
Artigo
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Community recommendations on cryoEM data archiving and validation

Kleywegt, Gerard J ; Adams, Paul D ; Butcher, Sarah J ; Lawson, Catherine L ; Rohou, Alexis ; Rosenthal, Peter B ; Subramaniam, Sriram ; Topf, Maya ; Abbott, Sanja ; Baldwin, Philip R ; Berrisford, John M ; Bricogne, Gérard ; Choudhary, Preeti ; Croll, Tristan I ; Danev, Radostin ; Ganesan, Sai J ; Grant, Timothy ; Gutmanas, Aleksandras ; Henderson, Richard ; Heymann, J Bernard ; Huiskonen, Juha T ; Istrate, Andrei ; Kato, Takayuki ; Lander, Gabriel C ; Lok, Shee Mei ; Ludtke, Steven J ; Murshudov, Garib N ; Pye, Ryan ; Pintilie, Grigore D ; Richardson, Jane S ; Sachse, Carsten ; Salih, Osman ; Scheres, Sjors H W ; Schroeder, Gunnar F ; Sorzano, Carlos Oscar S ; Stagg, Scott M ; Wang, Zhe ; Warshamanage, Rangana ; Westbrook, John D ; Winn, Martyn D ; Young, Jasmine Y ; Burley, Stephen K ; Hoch, Jeffrey C ; Kurisu, Genji ; Morris, Kyle ; Patwardhan, Ardan ; Velankar, Sameer

IUCrJ, 2024-03, Vol.11 (Pt 2), p.140-151

England: International Union of Crystallography

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10
An intrinsically disordered proteins community for ELIXIR [version 1; peer review: 2 approved]
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An intrinsically disordered proteins community for ELIXIR [version 1; peer review: 2 approved]

Davey, Norman E ; Babu, M. Madan ; Blackledge, Martin ; Bridge, Alan ; Capella-Gutierrez, Salvador ; Dosztanyi, Zsuzsanna ; Drysdale, Rachel ; Edwards, Richard J ; Elofsson, Arne ; Felli, Isabella C ; Gibson, Toby J ; Gutmanas, Aleksandras ; Hancock, John M ; Harrow, Jen ; Higgins, Desmond ; Jeffries, Cy M ; Le Mercier, Philippe ; Mészáros, Balint ; Necci, Marco ; Notredame, Cedric ; Orchard, Sandra ; Ouzounis, Christos A ; Pancsa, Rita ; Papaleo, Elena ; Pierattelli, Roberta ; Piovesan, Damiano ; Promponas, Vasilis J ; Ruch, Patrick ; Rustici, Gabriella ; Romero, Pedro ; Sarntivijai, Sirarat ; Saunders, Gary ; Schuler, Benjamin ; Sharan, Malvika ; Shields, Denis C ; Sussman, Joel L ; Tedds, Jonathan A ; Tompa, Peter ; Turewicz, Michael ; Vondrasek, Jiri ; Vranken, Wim F ; Wallace, Bonnie Ann ; Wichapong, Kanin ; Tosatto, Silvio C. E

F1000 research, 2019, Vol.8, p.1753 [Periódico revisado por pares]

England: Faculty of 1000 Ltd

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