Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

O'Leary, Nuala A. ; Wright, Mathew W. ; Brister, J. Rodney ; Ciufo, Stacy ; Haddad, Diana ; McVeigh, Rich ; Rajput, Bhanu ; Robbertse, Barbara ; Smith-White, Brian ; Ako-Adjei, Danso ; Astashyn, Alexander ; Badretdin, Azat ; Bao, Yiming ; Blinkova, Olga ; Brover, Vyacheslav ; Chetvernin, Vyacheslav ; Choi, Jinna ; Cox, Eric ; Ermolaeva, Olga ; Farrell, Catherine M. ; Goldfarb, Tamara ; Gupta, Tripti ; Haft, Daniel ; Hatcher, Eneida ; Hlavina, Wratko ; Joardar, Vinita S. ; Kodali, Vamsi K. ; Li, Wenjun ; Maglott, Donna ; Masterson, Patrick ; McGarvey, Kelly M. ; Murphy, Michael R. ; O'Neill, Kathleen ; Pujar, Shashikant ; Rangwala, Sanjida H. ; Rausch, Daniel ; Riddick, Lillian D. ; Schoch, Conrad ; Shkeda, Andrei ; Storz, Susan S. ; Sun, Hanzhen ; Thibaud-Nissen, Francoise ; Tolstoy, Igor ; Tully, Raymond E. ; Vatsan, Anjana R. ; Wallin, Craig ; Webb, David ; Wu, Wendy ; Landrum, Melissa J. ; Kimchi, Avi ; Tatusova, Tatiana ; DiCuccio, Michael ; Kitts, Paul ; Murphy, Terence D. ; Pruitt, Kim D.

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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

Morales, Joannella ; Pujar, Shashikant ; Loveland, Jane E ; Astashyn, Alex ; Bennett, Ruth ; Berry, Andrew ; Cox, Eric ; Davidson, Claire ; Ermolaeva, Olga ; Farrell, Catherine M ; Fatima, Reham ; Gil, Laurent ; Goldfarb, Tamara ; Gonzalez, Jose M ; Haddad, Diana ; Hardy, Matthew ; Hunt, Toby ; Jackson, John ; Joardar, Vinita S ; Kay, Michael ; Kodali, Vamsi K ; McGarvey, Kelly M ; McMahon, Aoife ; Mudge, Jonathan M ; Murphy, Daniel N ; Murphy, Michael R ; Rajput, Bhanu ; Rangwala, Sanjida H ; Riddick, Lillian D ; Thibaud-Nissen, Françoise ; Threadgold, Glen ; Vatsan, Anjana R ; Wallin, Craig ; Webb, David ; Flicek, Paul ; Birney, Ewan ; Pruitt, Kim D ; Frankish, Adam ; Cunningham, Fiona ; Murphy, Terence D

England: Nature Publishing Group

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Identification of Pseudomonas syringae pv. tomato genes induced during infection of Arabidopsis thaliana

Boch, Jens ; Joardar, Vinita ; Gao, Lisa ; Robertson, Tara L. ; Lim, Melisa ; Kunkel, Barbara N.

Oxford, UK: Blackwell Science Ltd

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Mouse genome annotation by the RefSeq project

McGarvey, Kelly M. ; Goldfarb, Tamara ; Cox, Eric ; Farrell, Catherine M. ; Gupta, Tripti ; Joardar, Vinita S. ; Kodali, Vamsi K. ; Murphy, Michael R. ; O’Leary, Nuala A. ; Pujar, Shashikant ; Rajput, Bhanu ; Rangwala, Sanjida H. ; Riddick, Lillian D. ; Webb, David ; Wright, Mathew W. ; Murphy, Terence D. ; Pruitt, Kim D.

New York: Springer US

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Improved reference genome of Aedes aegypti informs arbovirus vector control

Matthews, Benjamin J ; Dudchenko, Olga ; Kingan, Sarah B ; Koren, Sergey ; Antoshechkin, Igor ; Crawford, Jacob E ; Glassford, William J ; Herre, Margaret ; Redmond, Seth N ; Rose, Noah H ; Weedall, Gareth D ; Wu, Yang ; Batra, Sanjit S ; Brito-Sierra, Carlos A ; Buckingham, Steven D ; Campbell, Corey L ; Chan, Saki ; Cox, Eric ; Evans, Benjamin R ; Fansiri, Thanyalak ; Filipović, Igor ; Fontaine, Albin ; Gloria-Soria, Andrea ; Hall, Richard ; Joardar, Vinita S ; Jones, Andrew K ; Kay, Raissa G G ; Kodali, Vamsi K ; Lee, Joyce ; Lycett, Gareth J ; Mitchell, Sara N ; Muehling, Jill ; Murphy, Michael R ; Omer, Arina D ; Partridge, Frederick A ; Peluso, Paul ; Aiden, Aviva Presser ; Ramasamy, Vidya ; Rašić, Gordana ; Roy, Sourav ; Saavedra-Rodriguez, Karla ; Sharan, Shruti ; Sharma, Atashi ; Smith, Melissa Laird ; Turner, Joe ; Weakley, Allison M ; Zhao, Zhilei ; Akbari, Omar S ; Black, 4th, William C ; Cao, Han ; Darby, Alistair C ; Hill, Catherine A ; Johnston, J Spencer ; Murphy, Terence D ; Raikhel, Alexander S ; Sattelle, David B ; Sharakhov, Igor V ; White, Bradley J ; Zhao, Li ; Aiden, Erez Lieberman ; Mann, Richard S ; Lambrechts, Louis ; Powell, Jeffrey R ; Sharakhova, Maria V ; Tu, Zhijian ; Robertson, Hugh M ; McBride, Carolyn S ; Hastie, Alex R ; Korlach, Jonas ; Neafsey, Daniel E ; Phillippy, Adam M ; Vosshall, Leslie B

England: Nature Publishing Group

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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation

Pujar, Shashikant ; O'Leary, Nuala A ; Farrell, Catherine M ; Loveland, Jane E ; Mudge, Jonathan M ; Wallin, Craig ; Girón, Carlos G ; Diekhans, Mark ; Barnes, If ; Bennett, Ruth ; Berry, Andrew E ; Cox, Eric ; Davidson, Claire ; Goldfarb, Tamara ; Gonzalez, Jose M ; Hunt, Toby ; Jackson, John ; Joardar, Vinita ; Kay, Mike P ; Kodali, Vamsi K ; Martin, Fergal J ; McAndrews, Monica ; McGarvey, Kelly M ; Murphy, Michael ; Rajput, Bhanu ; Rangwala, Sanjida H ; Riddick, Lillian D ; Seal, Ruth L ; Suner, Marie-Marthe ; Webb, David ; Zhu, Sophia ; Aken, Bronwen L ; Bruford, Elspeth A ; Bult, Carol J ; Frankish, Adam ; Murphy, Terence ; Pruitt, Kim D

England: Oxford University Press

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Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3

Losada, Liliana ; Pakala, Suman B ; Fedorova, Natalie D ; Joardar, Vinita ; Shabalina, Svetlana A ; Hostetler, Jessica ; Pakala, Suchitra M ; Zafar, Nikhat ; Thomas, Elizabeth ; Rodriguez-Carres, Marianela ; Dean, Ralph ; Vilgalys, Rytas ; Nierman, William C ; Cubeta, Marc A

Oxford, UK: Blackwell Publishing Ltd

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Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA

Losada, Liliana ; Barker, Bridget M. ; Pakala, Suman ; Pakala, Suchitra ; Joardar, Vinita ; Zafar, Nikhat ; Mounaud, Stephanie ; Fedorova, Natalie ; Nierman, William C. ; Cramer, Robert A.

Dordrecht: Springer Netherlands

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Identification of novel hrp‐regulated genes through functional genomic analysis of the Pseudomonas syringae pv. tomato DC3000 genome

Zwiesler‐Vollick, Julie ; Plovanich‐Jones, Anne E. ; Nomura, Kinya ; Bandyopadhyay, Sruti ; Joardar, Vinita ; Kunkel, Barbara N. ; He, Sheng Yang

Oxford, UK: Blackwell Science Ltd

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Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solaniAG-3

Losada, Liliana ; Pakala, Suman B ; Fedorova, Natalie D ; Joardar, Vinita ; Shabalina, Svetlana A ; Hostetler, Jessica ; Pakala, Suchitra M ; Zafar, Nikhat ; Thomas, Elizabeth ; Rodriguez-Carres, Marianela ; Dean, Ralph ; Vilgalys, Rytas ; Nierman, William C ; Cubeta, Marc A

Oxford: Oxford University Press

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