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1
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
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CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor

Shoemaker, Christopher J ; Huang, Tina Q ; Weir, Nicholas R ; Polyakov, Nicole J ; Schultz, Sebastian W ; Denic, Vladimir Simonsen, Anne

PLoS Biology, 2019-04, Vol.17 (4), p.e2007044-e2007044 [Periódico revisado por pares]

United States: Public Library of Science

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2
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

Keeling, Patrick J ; Burki, Fabien ; Wilcox, Heather M ; Allam, Bassem ; Allen, Eric E ; Amaral-Zettler, Linda A ; Armbrust, E Virginia ; Archibald, John M ; Bharti, Arvind K ; Bell, Callum J ; Beszteri, Bank ; Bidle, Kay D ; Cameron, Connor T ; Campbell, Lisa ; Caron, David A ; Cattolico, Rose Ann ; Collier, Jackie L ; Coyne, Kathryn ; Davy, Simon K ; Deschamps, Phillipe ; Dyhrman, Sonya T ; Edvardsen, Bente ; Gates, Ruth D ; Gobler, Christopher J ; Greenwood, Spencer J ; Guida, Stephanie M ; Jacobi, Jennifer L ; Jakobsen, Kjetill S ; James, Erick R ; Jenkins, Bethany ; John, Uwe ; Johnson, Matthew D ; Juhl, Andrew R ; Kamp, Anja ; Katz, Laura A ; Kiene, Ronald ; Kudryavtsev, Alexander ; Leander, Brian S ; Lin, Senjie ; Lovejoy, Connie ; Lynn, Denis ; Marchetti, Adrian ; McManus, George ; Nedelcu, Aurora M ; Menden-Deuer, Susanne ; Miceli, Cristina ; Mock, Thomas ; Montresor, Marina ; Moran, Mary Ann ; Murray, Shauna ; Nadathur, Govind ; Nagai, Satoshi ; Ngam, Peter B ; Palenik, Brian ; Pawlowski, Jan ; Petroni, Giulio ; Piganeau, Gwenael ; Posewitz, Matthew C ; Rengefors, Karin ; Romano, Giovanna ; Rumpho, Mary E ; Rynearson, Tatiana ; Schilling, Kelly B ; Schroeder, Declan C ; Simpson, Alastair G B ; Slamovits, Claudio H ; Smith, David R ; Smith, G Jason ; Smith, Sarah R ; Sosik, Heidi M ; Stief, Peter ; Theriot, Edward ; Twary, Scott N ; Umale, Pooja E ; Vaulot, Daniel ; Wawrik, Boris ; Wheeler, Glen L ; Wilson, William H ; Xu, Yan ; Zingone, Adriana ; Worden, Alexandra Z Roberts, Roland G.

PLoS Biology, 2014-06, Vol.12 (6), p.e1001889 [Periódico revisado por pares]

United States: Public Library of Science

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3
Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients
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Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients

Rusthen, S ; Kristoffersen, A K ; Young, A ; Galtung, H K ; Petrovski, B É ; Palm, Ø ; Enersen, M ; Jensen, J L Appel, Silke

PloS one, 2019-06, Vol.14 (6), p.e0218319-e0218319 [Periódico revisado por pares]

United States: Public Library of Science

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4
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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5
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages

de Been, Mark ; Lanza, Val F ; de Toro, María ; Scharringa, Jelle ; Dohmen, Wietske ; Du, Yu ; Hu, Juan ; Lei, Ying ; Li, Ning ; Tooming-Klunderud, Ave ; Heederik, Dick J J ; Fluit, Ad C ; Bonten, Marc J M ; Willems, Rob J L ; de la Cruz, Fernando ; van Schaik, Willem Richardson, Paul M.

PLoS genetics, 2014-12, Vol.10 (12), p.e1004776-e1004776 [Periódico revisado por pares]

United States: Public Library of Science (PLoS)

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6
JASPAR 2020: update of the open-access database of transcription factor binding profiles
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JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, Oriol ; Castro-Mondragon, Jaime A ; Khan, Aziz ; van der Lee, Robin ; Zhang, Xi ; Richmond, Phillip A ; Modi, Bhavi P ; Correard, Solenne ; Gheorghe, Marius ; Baranašić, Damir ; Santana-Garcia, Walter ; Tan, Ge ; Chèneby, Jeanne ; Ballester, Benoit ; Parcy, François ; Sandelin, Albin ; Lenhard, Boris ; Wasserman, Wyeth W ; Mathelier, Anthony

Nucleic acids research, 2020-01, Vol.48 (D1), p.D87-D92 [Periódico revisado por pares]

England: Oxford University Press

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7
Energy compensation and adiposity in humans
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Energy compensation and adiposity in humans

Careau, Vincent ; Halsey, Lewis G. ; Pontzer, Herman ; Ainslie, Philip N. ; Andersen, Lene F. ; Anderson, Liam J. ; Arab, Lenore ; Baddou, Issad ; Bedu-Addo, Kweku ; Blaak, Ellen E. ; Blanc, Stephane ; Bonomi, Alberto G. ; Bouten, Carlijn V.C. ; Buchowski, Maciej S. ; Butte, Nancy F. ; Camps, Stefan G.J.A. ; Close, Graeme L. ; Cooper, Jamie A. ; Das, Sai Krupa ; Cooper, Richard ; Dugas, Lara R. ; Eaton, Simon D. ; Ekelund, Ulf ; Entringer, Sonja ; Forrester, Terrence ; Fudge, Barry W. ; Goris, Annelies H. ; Gurven, Michael ; Hambly, Catherine ; El Hamdouchi, Asmaa ; Hoos, Marije B. ; Hu, Sumei ; Joonas, Noorjehan ; Joosen, Annemiek M. ; Katzmarzyk, Peter ; Kempen, Kitty P. ; Kimura, Misaka ; Kraus, William E. ; Kushner, Robert F. ; Lambert, Estelle V. ; Leonard, William R. ; Lessan, Nader ; Martin, Corby K. ; Medin, Anine C. ; Meijer, Erwin P. ; Morehen, James C. ; Morton, James P. ; Neuhouser, Marian L. ; Nicklas, Theresa A. ; Ojiambo, Robert M. ; Pietiläinen, Kirsi H. ; Pitsiladis, Yannis P. ; Plange-Rhule, Jacob ; Plasqui, Guy ; Prentice, Ross L. ; Rabinovich, Roberto A. ; Racette, Susan B. ; Raichlen, David A. ; Ravussin, Eric ; Reilly, John J. ; Reynolds, Rebecca M. ; Roberts, Susan B. ; Schuit, Albertine J. ; Sjödin, Anders M. ; Stice, Eric ; Urlacher, Samuel S. ; Valenti, Giulio ; Van Etten, Ludo M. ; Van Mil, Edgar A. ; Wells, Jonathan C.K. ; Wilson, George ; Wood, Brian M. ; Yanovski, Jack ; Yoshida, Tsukasa ; Zhang, Xueying ; Murphy-Alford, Alexia J. ; Loechl, Cornelia U. ; Luke, Amy H. ; Rood, Jennifer ; Sagayama, Hiroyuki ; Schoeller, Dale A. ; Wong, William W. ; Yamada, Yosuke ; Speakman, John R.

Current biology, 2021-10, Vol.31 (20), p.4659-4666.e2 [Periódico revisado por pares]

England: Elsevier Inc

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8
Receptor‐mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy
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Receptor‐mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy

Ohnstad, Amelia E ; Delgado, Jose M ; North, Brian J ; Nasa, Isha ; Kettenbach, Arminja N ; Schultz, Sebastian W ; Shoemaker, Christopher J

The EMBO journal, 2020-12, Vol.39 (24), p.e104948-n/a [Periódico revisado por pares]

England: Blackwell Publishing Ltd

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9
pyseer: a comprehensive tool for microbial pangenome-wide association studies
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pyseer: a comprehensive tool for microbial pangenome-wide association studies

Lees, John A ; Galardini, Marco ; Bentley, Stephen D ; Weiser, Jeffrey N ; Corander, Jukka Stegle, Oliver

Bioinformatics, 2018-12, Vol.34 (24), p.4310-4312 [Periódico revisado por pares]

England: Oxford University Press

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10
RICOPILI: Rapid Imputation for COnsortias PIpeLIne
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RICOPILI: Rapid Imputation for COnsortias PIpeLIne

Lam, Max ; Awasthi, Swapnil ; Watson, Hunna J ; Goldstein, Jackie ; Panagiotaropoulou, Georgia ; Trubetskoy, Vassily ; Karlsson, Robert ; Frei, Oleksander ; Fan, Chun-Chieh ; De Witte, Ward ; Mota, Nina R ; Mullins, Niamh ; Brügger, Kim ; Lee, S Hong ; Wray, Naomi R ; Skarabis, Nora ; Huang, Hailiang ; Neale, Benjamin ; Daly, Mark J ; Mattheisen, Manuel ; Walters, Raymond ; Ripke, Stephan Schwartz, Russell

Bioinformatics, 2020-02, Vol.36 (3), p.930-933 [Periódico revisado por pares]

England: Oxford University Press

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