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Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems
Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems
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Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

Thomas, Paul D ; Hill, David P ; Mi, Huaiyu ; Osumi-Sutherland, David ; Van Auken, Kimberly ; Carbon, Seth ; Balhoff, James P ; Albou, Laurent-Philippe ; Good, Benjamin ; Gaudet, Pascale ; Lewis, Suzanna E ; Mungall, Christopher J

Nature genetics, 2019-10, Vol.51 (10), p.1429-1433 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways
Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways
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Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways

Hill, David P ; Drabkin, Harold J ; Smith, Cynthia L ; Van Auken, Kimberly M ; D’Eustachio, Peter Baryshnikova, A

Genetics (Austin), 2023-10, Vol.225 (2) [Periódico revisado por pares]

US: Oxford University Press

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3
GOnet: a tool for interactive Gene Ontology analysis
GOnet: a tool for interactive Gene Ontology analysis
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GOnet: a tool for interactive Gene Ontology analysis

Pomaznoy, Mikhail ; Ha, Brendan ; Peters, Bjoern

BMC bioinformatics, 2018-12, Vol.19 (1), p.470-470, Article 470 [Periódico revisado por pares]

England: BioMed Central Ltd

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4
A large-scale evaluation of computational protein function prediction
A large-scale evaluation of computational protein function prediction
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A large-scale evaluation of computational protein function prediction

Radivojac, Predrag ; Clark, Wyatt T ; Oron, Tal Ronnen ; Schnoes, Alexandra M ; Wittkop, Tobias ; Sokolov, Artem ; Graim, Kiley ; Funk, Christopher ; Verspoor, Karin ; Ben-Hur, Asa ; Pandey, Gaurav ; Yunes, Jeffrey M ; Talwalkar, Ameet S ; Repo, Susanna ; Souza, Michael L ; Piovesan, Damiano ; Casadio, Rita ; Wang, Zheng ; Cheng, Jianlin ; Fang, Hai ; Gough, Julian ; Koskinen, Patrik ; Törönen, Petri ; Nokso-Koivisto, Jussi ; Holm, Liisa ; Cozzetto, Domenico ; Buchan, Daniel W A ; Bryson, Kevin ; Jones, David T ; Limaye, Bhakti ; Inamdar, Harshal ; Datta, Avik ; Manjari, Sunitha K ; Joshi, Rajendra ; Chitale, Meghana ; Kihara, Daisuke ; Lisewski, Andreas M ; Erdin, Serkan ; Venner, Eric ; Lichtarge, Olivier ; Rentzsch, Robert ; Romero, Alfonso E ; Bhat, Prajwal ; Paccanaro, Alberto ; Hamp, Tobias ; Kaßner, Rebecca ; Seemayer, Stefan ; Vicedo, Esmeralda ; Schaefer, Christian ; Achten, Dominik ; Auer, Florian ; Boehm, Ariane ; Braun, Tatjana ; Hecht, Maximilian ; Heron, Mark ; Hönigschmid, Peter ; Hopf, Thomas A ; Kiening, Michael ; Krompass, Denis ; Landerer, Cedric ; Mahlich, Yannick ; Roos, Manfred ; Björne, Jari ; Salakoski, Tapio ; Wong, Andrew ; Shatkay, Hagit ; Gatzmann, Fanny ; Sommer, Ingolf ; Wass, Mark N ; Sternberg, Michael J E ; Škunca, Nives ; Supek, Fran ; Bošnjak, Matko ; Panov, Panče ; Džeroski, Sašo ; Šmuc, Tomislav ; Kourmpetis, Yiannis A I ; van Dijk, Aalt D J ; ter Braak, Cajo J F ; Zhou, Yuanpeng ; Gong, Qingtian ; Dong, Xinran ; Tian, Weidong ; Falda, Marco ; Fontana, Paolo ; Lavezzo, Enrico ; Di Camillo, Barbara ; Toppo, Stefano ; Lan, Liang ; Djuric, Nemanja ; Guo, Yuhong ; Vucetic, Slobodan ; Bairoch, Amos ; Linial, Michal ; Babbitt, Patricia C ; Brenner, Steven E ; Orengo, Christine ; Rost, Burkhard ; Mooney, Sean D ; Friedberg, Iddo

Nature methods, 2013-03, Vol.10 (3), p.221-227 [Periódico revisado por pares]

United States: Nature Publishing Group

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5
SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters
SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters
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SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters

Nakayama, Robert T ; Pulice, John L ; Valencia, Alfredo M ; McBride, Matthew J ; McKenzie, Zachary M ; Gillespie, Mark A ; Ku, Wai Lim ; Teng, Mingxiang ; Cui, Kairong ; Williams, Robert T ; Cassel, Seth H ; Qing, He ; Widmer, Christian J ; Demetri, George D ; Irizarry, Rafael A ; Zhao, Keji ; Ranish, Jeffrey A ; Kadoch, Cigall

Nature genetics, 2017-11, Vol.49 (11), p.1613-1623 [Periódico revisado por pares]

United States: Nature Publishing Group

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6
Predicting instances of pathway ontology classes for pathway integration
Predicting instances of pathway ontology classes for pathway integration
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Predicting instances of pathway ontology classes for pathway integration

Wang, Lucy Lu ; Thomas Hayman, G ; Smith, Jennifer R ; Tutaj, Monika ; Shimoyama, Mary E ; Gennari, John H

Journal of biomedical semantics, 2019-06, Vol.10 (1), p.11-11, Article 11 [Periódico revisado por pares]

England: BioMed Central Ltd

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7
FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
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FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments

Scala, Giovanni ; Serra, Angela ; Marwah, Veer Singh ; Saarimäki, Laura Aliisa ; Greco, Dario

BMC bioinformatics, 2019-02, Vol.20 (1), p.79-79, Article 79 [Periódico revisado por pares]

England: BioMed Central

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8
Identification of a large set of rare complete human knockouts
Identification of a large set of rare complete human knockouts
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Identification of a large set of rare complete human knockouts

Sulem, Patrick ; Helgason, Hannes ; Oddson, Asmundur ; Stefansson, Hreinn ; Gudjonsson, Sigurjon A ; Zink, Florian ; Hjartarson, Eirikur ; Sigurdsson, Gunnar Th ; Jonasdottir, Adalbjorg ; Jonasdottir, Aslaug ; Sigurdsson, Asgeir ; Magnusson, Olafur Th ; Kong, Augustine ; Helgason, Agnar ; Holm, Hilma ; Thorsteinsdottir, Unnur ; Masson, Gisli ; Gudbjartsson, Daniel F ; Stefansson, Kari

Nature genetics, 2015-05, Vol.47 (5), p.448-452 [Periódico revisado por pares]

United States: Nature Publishing Group

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9
Harmonizing model organism data in the Alliance of Genome Resources
Harmonizing model organism data in the Alliance of Genome Resources
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Harmonizing model organism data in the Alliance of Genome Resources

Albou, Laurent-Philippe ; Alexander, Micheal ; Antonazzo, Giulia ; Argasinska, Joanna ; Arnaboldi, Valerio ; Attrill, Helen ; Becerra, Andrés ; Bello, Susan M ; Blake, Judith A ; Blodgett, Olin ; Cain, Scott ; Calvi, Brian R ; Carbon, Seth ; Chan, Juancarlos ; Chen, Wen J ; Michael Cherry, J ; Crosby, Madeline A ; da Veiga Beltrame, Eduardo ; De Pons, Jeffrey L ; D’Eustachio, Peter ; Diamantakis, Stavros ; dos Santos, Gilberto ; Douglass, Eric ; Eagle, Anne ; Engel, Stacia R ; Fashena, David ; Foley, Saoirse ; Frazer, Ken ; Gao, Sibyl ; Gibson, Adam C ; Gondwe, Felix ; Goodman, Josh ; Sian Gramates, L ; Grove, Christian A ; Hale, Paul ; Harris, Todd ; Thomas Hayman, G ; Hill, David P ; Howe, Douglas G ; Howe, Kevin L ; Hu, Yanhui ; Jha, Sagar ; Kadin, James A ; Kalita, Patrick ; Karra, Kalpana ; Kishore, Ranjana ; Lee, Raymond ; Longden, Ian ; Luypaert, Manuel ; MacPherson, Kevin A ; Martin, Ryan ; Marygold, Steven J ; Matthews, Beverley ; McAndrews, Monica S ; Millburn, Gillian ; Miyasato, Stuart ; Motenko, Howie ; Muller, Hans-Michael ; Mungall, Christopher J ; Nash, Robert S ; Ng, Patrick ; Nuin, Paulo ; Paddock, Holly ; Paulini, Michael ; Perrimon, Norbert ; Quinton-Tulloch, Mark ; Raciti, Daniela ; Ramachandran, Sridhar ; Richardson, Joel E ; Gelbart, Susan Russo ; Schaper, Kevin ; Schindelman, Gary ; Shimoyama, Mary ; Shrivatsav, Ajay ; Skrzypek, Marek ; Smith, Constance M ; Smith, Cynthia L ; Smith, Jennifer R ; Stein, Lincoln ; Tabone, Christopher J ; Thomas, Paul D ; Thorat, Ketaki ; Thota, Jyothi ; Toro, Sabrina ; Tomczuk, Monika ; Tutaj, Marek A ; Tutaj, Monika ; Urbano, Jose-Maria ; Van Auken, Kimberly ; Van Slyke, Ceri E ; Wang, Shur-Jen ; Weng, Shuai ; Westerfield, Monte ; Williams, Gary ; Wilming, Laurens G ; Wong, Edith D ; Wright, Adam ; Yook, Karen ; Zarowiecki, Magdalena ; Zhou, Pinglei Wood, V

Genetics (Austin), 2022-04, Vol.220 (4) [Periódico revisado por pares]

United States: Oxford University Press

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10
Disease Ontology: improving and unifying disease annotations across species
Disease Ontology: improving and unifying disease annotations across species
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Disease Ontology: improving and unifying disease annotations across species

Bello, Susan M ; Shimoyama, Mary ; Mitraka, Elvira ; Laulederkind, Stanley J F ; Smith, Cynthia L ; Eppig, Janan T ; Schriml, Lynn M

Disease models & mechanisms, 2018-03, Vol.11 (3) [Periódico revisado por pares]

England: The Company of Biologists Ltd

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