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Computational biology of transcription factor binding
Istvan Ladunga
New York, NY Humana Press 2010
Localização:
CQ - Conjunto das Químicas
(574.02854 C7382 )
(Acessar)
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Título:
Computational biology of transcription factor binding
Autor:
Istvan Ladunga
Assuntos:
Computational biology
;
BIOINFORMÁTICA
;
FATORES DE TRANSCRIÇÃO (GENÉTICA)
;
REGULAÇÃO GÊNICA
;
EXPRESSÃO GÊNICA
;
Transcription factors
;
Computational Biology -- Laboratory Manuals
;
Transcription Factors -- Laboratory Manuals
Notas:
Includes bibliographical references and index
Descrição:
An overview of the computational analyses and discovery of transcription factor binding sites / Istvan Ladunga -- Components and mechanisms of regulation of gene expression / Alper Yilmaz -- Regulatory regions in DNA : promoters, enhancers, silencers, and insulators / Jean-Jack M. Riethoven -- Three-dimensional structures of DNA-bound transcriptional regulators / Tripti Shrivastava and Tahir H. Tahirov -- Identification of promoter regions and regulatory sites / Victor V. Solovyev, Ilham A. Shahmuradov, and Asaf A. Salamov -- Motif discovery using expectation maximization and Gibbs' sampling / Gary D. Stormo -- Probabilistic approaches to transcription factor binding site prediction / Stefan Posch ... [et al.] -- The motif tool assessment platform (MTAP) for sequence-based transcription factor binding site prediction tools / Daniel Quest and Hesham Ali -- Computational analysis of ChIP-seq data / Hongkai Ji -- Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq / Shuo Jiao ... [et al.] -- Sequence analysis of chromatin immunoprecipitation data for transcription factors / Kenzie D. MacIsaac and Ernest Fraenkel -- Inferring protein-DNA interaction parameters from SELEX experiments / Marko Djordjevic -- Kernel-based identification of regulatory modules / Sebastian J. Schultheiss -- Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq / Andrew B. Conley and I. King Jordan -- Target gene identification via nuclear receptor binding site prediction / Gabor Varga -- Computing chromosome conformation / James Fraser ... [et al.] -- Large-scale identification and analysis of C-proteins / Valery Sorokin, Konstantin Severinov, and Mikhail S. Gelfand -- Evolution of cis-regulatory sequences in Drosophila / Xin He and Saurabh Sinha -- Regulating the regulators : modulators of transcription factor activity /
Logan Everett, Matthew Hansen, and Sridhar Hannenhalli -- Annotating the regulatory genome / Stephen B. Montgomery ... [et al.] -- Computational identification of plant transcription factors and the construction of the plantTFDB database / Kun He ... [et al.] -- Practical computational methods for regulatory genomics : a cisGRN-lexicon and cisGRN-browser for gene regulatory networks / Sorin Istrail ... [et al.] -- Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks/ Weijun Luo and Peter J. Woolf -- Computational methods for analyzing dynamic regulatory networks / Anthony Gitter, Yong Lu, and Ziv Bar-Joseph
Títulos relacionados:
Série:Springer protocols; Methods in molecular biology (Clifton, N.J.) v. 674
Editor:
New York, NY Humana Press
Data de criação/publicação:
2010
Formato:
xi, 454 p ill. (some col.) 26 cm.
Idioma:
Inglês
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