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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry, Julie A ; Juty, Nick ; Blomberg, Niklas ; Burdett, Tony ; Conlin, Tom ; Conte, Nathalie ; Courtot, Mélanie ; Deck, John ; Dumontier, Michel ; Fellows, Donal K ; Gonzalez-Beltran, Alejandra ; Gormanns, Philipp ; Grethe, Jeffrey ; Hastings, Janna ; Hériché, Jean-Karim ; Hermjakob, Henning ; Ison, Jon C ; Jimenez, Rafael C ; Jupp, Simon ; Kunze, John ; Laibe, Camille ; Le Novère, Nicolas ; Malone, James ; Martin, Maria Jesus ; McEntyre, Johanna R ; Morris, Chris ; Muilu, Juha ; Müller, Wolfgang ; Rocca-Serra, Philippe ; Sansone, Susanna-Assunta ; Sariyar, Murat ; Snoep, Jacky L ; Soiland-Reyes, Stian ; Stanford, Natalie J ; Swainston, Neil ; Washington, Nicole ; Williams, Alan R ; Wimalaratne, Sarala M ; Winfree, Lilly M ; Wolstencroft, Katherine ; Goble, Carole ; Mungall, Christopher J ; Haendel, Melissa A ; Parkinson, Helen

PLoS Biology, 2017-06, Vol.15 (6), p.e2001414 [Periódico revisado por pares]

United States: Public Library of Science

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Título:
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
Autor: McMurry, Julie A ; Juty, Nick ; Blomberg, Niklas ; Burdett, Tony ; Conlin, Tom ; Conte, Nathalie ; Courtot, Mélanie ; Deck, John ; Dumontier, Michel ; Fellows, Donal K ; Gonzalez-Beltran, Alejandra ; Gormanns, Philipp ; Grethe, Jeffrey ; Hastings, Janna ; Hériché, Jean-Karim ; Hermjakob, Henning ; Ison, Jon C ; Jimenez, Rafael C ; Jupp, Simon ; Kunze, John ; Laibe, Camille ; Le Novère, Nicolas ; Malone, James ; Martin, Maria Jesus ; McEntyre, Johanna R ; Morris, Chris ; Muilu, Juha ; Müller, Wolfgang ; Rocca-Serra, Philippe ; Sansone, Susanna-Assunta ; Sariyar, Murat ; Snoep, Jacky L ; Soiland-Reyes, Stian ; Stanford, Natalie J ; Swainston, Neil ; Washington, Nicole ; Williams, Alan R ; Wimalaratne, Sarala M ; Winfree, Lilly M ; Wolstencroft, Katherine ; Goble, Carole ; Mungall, Christopher J ; Haendel, Melissa A ; Parkinson, Helen
Assuntos: 21st century ; Academic libraries ; Accessibility ; archives ; Archives & records ; BASIC BIOLOGICAL SCIENCES ; biodiversity ; Bioinformatics ; Biological Science Disciplines - methods ; Biological Science Disciplines - statistics & numerical data ; Biological Science Disciplines - trends ; Biology and Life Sciences ; Bricks ; citation analysis ; Colleges & universities ; colon ; Computational Biology - methods ; Computational Biology - trends ; Computer and Information Sciences ; Computer science ; Data bases ; Data collection ; Data integration ; Data Mining - methods ; Data Mining - statistics & numerical data ; Data Mining - trends ; Databases, Factual - statistics & numerical data ; Databases, Factual - trends ; Datasets ; Digital curation ; Ecology and Environmental Sciences ; Epidemiology ; Forecasting ; Generators ; Genomes ; Genomics ; Health informatics ; Humans ; Integration ; Internet ; Knowledge base ; KNOWLEDGE MANAGEMENT AND PRESERVATION ; Laboratories ; Life sciences ; Medicine and Health Sciences ; Methods ; Molecular biology ; ontologies ; Ontology ; Referencing ; Repositories ; Research and Analysis Methods ; Reuse ; Scientific communication ; sequence databases ; Social Sciences ; Software ; Software Design ; syntax ; World Wide Web
É parte de: PLoS Biology, 2017-06, Vol.15 (6), p.e2001414
Notas: AC02-05CH11231; R24OD011883; U41HG007822; U24AI117966; U54AI117925; 675728; 312455; 654248; 601043; BB/L005069/1; BB/M013189/1; BB/K019783/1; BBS/E/B/000C0419; BB/M006891/1; BB/M017702/1; BB/L005050/1
National Inst. of Health (NIH) (United States)
European Commission (EC)
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Biotechnology and Biological Sciences Research Council (BBSRC) (United Kingdom)
The authors have declared that no competing interests exist.
Descrição: In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.
Editor: United States: Public Library of Science
Idioma: Inglês

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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

United States: Public Library of Science

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